HsaINT0154480 @ hg38
Intron Retention
Gene
ENSG00000187122 | SLIT1
Description
slit guidance ligand 1 [Source:HGNC Symbol;Acc:HGNC:11085]
Coordinates
chr10:97031606-97034542:-
Coord C1 exon
chr10:97034471-97034542
Coord A exon
chr10:97031678-97034470
Coord C2 exon
chr10:97031606-97031677
Length
2793 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
TCCATCTCCTTCCTCCGCAGGAT
3' ss Score
12.46
Exon sequences
Seq C1 exon
GGACCTGAGCAACAACAAGATCAGTTCCTTAAGCAATTCCTCCTTCACCAACATGAGCCAGCTGACCACTCT
Seq A exon
GTGAGTCCCAGCAGGGCTGGGGTGGGGGGCCCCGGGGCCATGGCTGTGAGTCATTCCCTAGCCCCAGCCTGTGCTTTTTGCTCCCAGATCCCTCGCCTGCAGACGCCTTGCCCTCTGGAGAGGGTGCCGGGCCTGAGAGCCTAAAAGACTTTGAAAAAACATCTTTCATTGTGAAATACAACATATGGCATATATGGAAAATAATAATGCAAAAAGTAAATAGTGCAAAAAAATAAATATACAGTTTCACAAATAATCATAAAGCTAGCACACATGTAGATACCAAGTCAAAAATTAAGGACACTCGGCCAGGCGCAGTGGCTCACGCCTATAATCCCAGCACTTTGGGAGGCAGAGGCAGGTGAATCACTTGAGGTCAGGAATTCAAGACCACCCTGACCAACATGGTGAAACCCCATGTCTACCAAAAATACAAAAATTAATCGGGCTGGGTGGCGGGTGCCTGTAGTCCCACCTACTTGGGAGGCTGAGGCAGGAGAATCGCGTGAACCTGGGAGGTGGAGCTTGCAGTGAGCCAAGATCGTGCCATTGCACTCCAGCCTGGGTGATAGAGCGAGACTCTGTCTCAGAAAAAAAAAAAAAAAAAAAATAGAACAGTGCTAGCACCTTGTCCCTTCCTGATCCTTATTGCTGTCTCCTCCCCTACCCCAAGGCAGCTGCTGTCCTGACTTTATGAGGATCACTTCTTTTATTTTCTTTACAGCATTACCATCTACATAAGCATTTCTAAATAATATAGTCTAATTTTGTCGATTTTCACTTTGTTCAAGTGGAATCATATGGGTGATAGTCTTTTGTATCTGGCTTCTCTTGCTTAGCATTGTCTATGAGATCCATTCATGCCACCGTGGCAGCTGTGGTCTGTTCATTCTCATTGCTAGGTAATGTTCCTTTGGAGGAACGGGCCACACTTTCCTCATCTATTCTAGTCTTGATGGATATTGAGGTTGTTTCCAGTTTGGATTGTTGTGAGCGGTGACCCTCTGAACATTTTTTGTGGCCATATTCTAAGATATTTAAATGCTGGCTTTAATTATATTCCAAGCAACTGATCAGAACATATTACCAAGTGTCCCTTATATTTGCCTGGTGTGTAAAAGTATCTCATTCACCTTCCAACACCTCACTTTACAGATAGAACAGTAGAGCCAGTACCCAAAAAAGGAAGGGGCCCTGACCCAGCCATTCTCCAGGAGCTGAATGTGGGCCCAAGCCAAAATACAAAATAAAAAAATTAGTCAGGTGTGGTGGTGCACATCTGTGGTCCCAGCTACTTGGGGGGCTGAGGTGGGAGGATGGTTTGAGCCTGGGAGGCAGAGGTTGCAGCAAGCCAAGATCACACCCCTGCACCCCATCCTGGGTGACAGAGCTGGACCTTGTCTCAAAAAAAAAAAAAAAAGAAAGAAAGAAAAAGAGTGCTATTCTTGATAATCCCCTGCTCCTGCCTCTCCCAGCTCCGAGACCCAGGCAACCACTGGTCTGCTTTCTGTCACTGTAGGTTAGTTTGCATTTTCTAGGGTTTTACATACAAATGGAGAAAGTCGTTTTTGCTTGGCTTCTGCGCCCAGCATGATTATTTTGAGCTTCACCCATGGTGTGGTGTTGCATGTGCCGGTAGCTCTTTCTCATTGCTGAGCTGTGTTCCACTGTACAGGCATGGATGTGCCACAGTTTGCTCATCCATTCGTCTGCTGGGGAACACGGGGGCTGTTTCCAGCATGACGCTATTGCAAGTGTGATTTCCCTTGTTAATCTGCCTGTCTGCCCTGGATGGATTCAGTTACTTGGAAGCATTTTGGGACAGTGGCTTAGCCTGTGGGCTCTGGAAACTGAAAGCTATAATGAAAATCCCTTCTTAATAACTTTTTTTTTTTTTTTTGAGATGGGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATTTTGGCTCACTGCAACCTCTGCCTCCCAGATTCAAGTGATTCCCCTGCCTCAGCCTCTCGAGTAGCTGGGATTATAGGCGTCTACCACCATGCCTGGCTAATATTTGTATTTTTAGGAGAGACGGGGTTTTGCCATGTCGGTCAGGCTGTTCTCAAACTCCTGACCTCAGGTGATCCGCCCACCTCAGCTTCCCAAAGTGCTGGGATTACAAGAGTCAGCCACCGCATCCAGCCTTCTTAATGACTTAATAATGTGACCCTGGAGAAGTTTTTTCACCTCTCAAGGCCTCAGTCTCCTCATCTATAAGATGGGAATAGTGACAGCACCTTCCTCACTGTCACAGCTTTTCAATAGTAAATTATTGTAGATGACTTTGCCTGTCCTCCCTGGAAGTGGTCGGCTGAGACGGTGAGCTCCCCGCAGTCAGGTGTCACCTTCATAGGGAACTCGCCTATGCACCTTGCTGGGGCAGCCCCTTAGGGAATGTTCTCAATCATAACAACAGCAACTCTCCTTTGTTGAGGATTTATTGGAGTCAGGCATGATGCTAAGTGCTTCACCTGGATTTCGTCCCCAGGACAGCCCTATGGAGTTGGCATTATTTTTGTCCCTATTTTACAGTCGGGGGAACTGATTGAGGCAGAAGGGATTAGGGGGCATGCCCAAGACCACCAGCTTCTTAGGGCGCAGCCCAGCCCATGCACTTGCCGGCTGCTCTGCCTCCCCTCACAGAGCCCGAGGAGGCTGCTGGGTGAGAGGGACCTCCACGTCCTGGGCGGCGGCTGTGCCCACAGGGGCCAGGCACTAACACAGTGCCCTTCCTCCATCTCCTTCCTCCGCAG
Seq C2 exon
GATCCTCAGCTACAATGCCCTGCAGTGCATCCCGCCTTTGGCCTTCCAGGGACTCCGCTCCCTGCGCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187122:ENST00000266058:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
NA
C2:
PF138551=LRR_8=FE(39.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains