MmuINT1031622 @ mm10
Intron Retention
Gene
ENSMUSG00000025020 | Slit1
Description
slit homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1315203]
Coordinates
chr19:41625522-41627312:-
Coord C1 exon
chr19:41627241-41627312
Coord A exon
chr19:41625594-41627240
Coord C2 exon
chr19:41625522-41625593
Length
1647 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
TTCCTCCCTCCTCCCTGCAGGAT
3' ss Score
13.82
Exon sequences
Seq C1 exon
GGACTTGAGCAACAACAAGATCAGTTCCTTGAGCAATTCTTCCTTCACCAACATGAGCCAGCTGACCACGCT
Seq A exon
GTGAGTGCCTGCCAGCAGGGCCGGGCGGGCACAGGGATATGGCATCAGGCTGTGCTGGCATCACTGGGATCACATGCAGGTGCCCCTTCCCACCAGAGAGGGGCCTGAGAGCCTACAGACTACATGACACCCAGCTTTTGGCCATTGTCAAATGTAAAAAAAAAAATATAGCACACACATGGCAAATATAAGCAATGCGGGCTAATGCCTGTGGCCAATGGCTTGGGATATTGTAGAAGCCAGCATGGGGTTTCTTAGCACACGGGCACAGCATTTTCAGAGGGTCTGATCTCACAACAATCTGAGCTGAACACAACCCTCACAACCCTCAGTAGTAGACTGGGTAAGGAAGGTGTAGTGAAGGCATACATAGGCATGAACATGGCTAGAACCCCAGTTGTCACCAAGGAACTGATCACAAGGACAGAGTAAGGAAAACAAGCCAAACATAAAAGTCTCTTCCAAATGACCTAACTCCTTGAGTTACACATCTTGTGCTGGGACCTGAGGACTTTCCCAGGTGAGACTTAGATCAAACCTGAAAGCCAGTACGGAAAGGGCCCCACTTAGCCAGCTTGTAAGACCAGAGTATGAGCAGAGGCCAGGTCTCCCGCTTGCATCTATGGGTCAGCTCATGCCCACCCTCACCTTCATGACAATCTGGTGACTTGCCCACTCTTCTCTGGAAAGATTTAACTGTGAATGGGCTTCCATGAGCCTGGTTGTGAAGGCCACCTCCACCTATGTGGTGTTTCAGGTCCTAGGTCCCAAGTACCTCTAGGGGCATTTGGCAACATCAGAAGACACGTAGTTGTTATACTGTGGAGGGAGGATGCTGCTAGCACAGAGTGGCCAGAGGTTGGGAGGACCACACCCCTCCCTCAGCACCATGGAGTGGCTAGAGTTCAGGGAGACCACAGCCCTCCCTCAGCACCTGGAAAAGCCCCACAGCCTGGAGCTGACAATAATGCTGAGCTTGACAAACTCGACTAAGCGATCTCAGCAGCCATGAGGAATGCGGTGTTCTTTCCTCTGCCGTGGGCAGTTCCCTTCACTTGGATTTTTAAAAATAATTCTATTTAGGTATATTAATATGCAACAAACATCCAATATTAAAGCATAGACATTGATAGCCGGGAGTGATGACTCATAATCCCAGCACGGAGGCACGGGGATTGCTGCAAGTTCGAGGCTAGCTAGGACTACATAGCAAGACCCTGTCTCAAAAAGGGTACAGATTTTGGCCAACTTTTCTATAATGACAGCACCAGGAAAGCCCTCACCACAACCTGAACCTCTGAACCTGGTCAGAGATTCACATAAAAAGATTCACTTTGTTTGGTGAGTCGGCATAATTACTCTGAGATCCTTCCACATGTGGCTGGTTCCTTCCCTTGATGCCAGAGGCATGCTCTCCGGTCTGCATATCTATCACAGAATCAGCTCCCTCACCAATCTGCCTGTCTGCCCTTGGTCGGTTCATTTATGTGGGTTAGCATGTGGGCTCTAGAAATACAACCCTAATACAAATACTGTTAACTAACTTCATAACATAACCCTGGCCTCAAAGCCTCAGCTTGCTCACCCATAGGATGGGTTAGGAATAGCCCTTCATCCCTGCCTTAGCTTCCTCCCTCCTCCCTGCAG
Seq C2 exon
GATCCTCAGCTACAATGCCCTCCAGTGCATCCCTCCTCTGGCCTTTCAAGGACTTCGTTCGCTGCGCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025020:ENSMUST00000025993:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(39.3=100)
A:
NA
C2:
PF138551=LRR_8=FE(39.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types