HsaINT0157105 @ hg38
Intron Retention
Gene
ENSG00000105866 | SP4
Description
Sp4 transcription factor [Source:HGNC Symbol;Acc:HGNC:11209]
Coordinates
chr7:21428034-21428792:+
Coord C1 exon
chr7:21428034-21428258
Coord A exon
chr7:21428259-21428676
Coord C2 exon
chr7:21428677-21428792
Length
418 bp
Sequences
Splice sites
5' ss Seq
GCGGTACGT
5' ss Score
10.27
3' ss Seq
GGTGGGGGGGTTTGTTGCAGATC
3' ss Score
4.5
Exon sequences
Seq C1 exon
ATCAAGGGCGAGTCAGCCGGGCTCGGGCGGAGAGAGGAGCTGCTACGCCACAGCCCAGCGGCGGCCATTCGCGGAAAAAGAGGCAGAGCCTGTGCCAGCTACAGCCTCCTCCGAGCCACCGCGGGCGGGCGGGACCGGCCTCTCCTCCCGCCTCGCCCCCACCCCCACCCACCTCTATCCCAGTGTCTCCGTCTGAGGGTTTGTCCTGTTAATGCGGGATGAGCG
Seq A exon
GTACGTATTCTCCACCCCCCTCAGTCTCCTTCGCCGCCTCCCTCTCTCCCTCCCTCCCCAGACCCTGCTCGGTTCTCCCCCCTCCCCCGGGGCCGCTGAGATGCTTTAAGGGGAGGAGGAGAGGGCGGGAGGGAATCGGGGAGGGAAGGAGGGTTGTGTTTTGTCTTAATGTCTGAGAGAGAACAACCTCCTTCTGGGTGTTGCTCTGGAGCCGATGGGTCGGGTTTCAAACCACGTTTTGTGATATCCCCCTCCTCCCTTCCCTCCTTCTCCCCCACCCCCTGCCGGTGTGCGTGGATCGCGGGTTTATGGAGATTAATGTTCGGGGGGAGGGGGGAGAAGAGGAGAGGAAGAAGACGAATAATAATAATCCTAATAACCTGTTGTCGTGTGTGTGTGGTGGGGGGGTTTGTTGCAG
Seq C2 exon
ATCAGAAGAAGGAGGAGGAGGAGGAGGCGGCAGCGGCAGCGGCGATGGCTACAGAAGGAGGGAAAACCTCTGAGCCAGAGAATAACAATAAAAAACCCAAAACCTCAGGCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105866:ENST00000222584:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.997
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGGCGGAGAGAGGAG
R:
CTGGGAGCCTGAGGTTTTGG
Band lengths:
320-738
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains