RnoINT0141902 @ rn6
Intron Retention
Gene
ENSRNOG00000005472 | Sp4
Description
Sp4 transcription factor [Source:RGD Symbol;Acc:3741]
Coordinates
chr6:146195175-146195819:-
Coord C1 exon
chr6:146195700-146195819
Coord A exon
chr6:146195285-146195699
Coord C2 exon
chr6:146195175-146195284
Length
415 bp
Sequences
Splice sites
5' ss Seq
GCGGTACGT
5' ss Score
10.27
3' ss Seq
TGGTGGTGGGGTTGTTGCAGATC
3' ss Score
4.9
Exon sequences
Seq C1 exon
GCCTCCTCCGAGCCACCGCGGGCGGGCGGGACCGGCCTCTCCTCCCGCCTCGCCCCCACCCCCACCCACCTCTATCCCAGTGTCTCTGAGAGGGTTTGTCCTGTTAATGCGGGATGAGCG
Seq A exon
GTACGTATTCTCCACCCCCCTCGGTCTCCTTCACCGCCTCCCTTCGTCCCTCCCTCCCCAGACCCTGCTCGCTTCCCCCTCCCCCGGGGCCGCGGAGATGCTGGAAGGGGAGGAGGAGAGGGCGGGAGGGAACCAGGGGGAGGGAAGGAGGGCTGTGTTTTGTCTTAATGTCTGAGCTAGAACAACCTCCTTCTGGGTGTTGCTCTGGAGCCTATGGGTCGGGTTTCAAACCACGTTTCGTGAGAGCCCCCTCCTCCCTTCCCTCCTTCTCCCCCACCCCCTGCCGGTGTGCACGGATCGAGGGTTTACGGAGATTAATGTTCAGGAGGAGGGGGGGGGAGAAGGGAGGAGAACGAATAATAATAATCCTAATAACCTGTTGTCGTGTGTGTTGGTGGTGGTGGGGTTGTTGCAG
Seq C2 exon
ATCAGAAGAAGGAGGAGGAGGAGGAGGCGGCAGCGGCAATGGCTACAGAAGGAGGGAAAACCTCTGAGCCAGAGAATAACAATAAAAAACCCAAAACCTCAGGCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005472:ENSRNOT00000007625:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]