HsaINT0157110 @ hg38
Intron Retention
Gene
ENSG00000204335 | SP5
Description
Sp5 transcription factor [Source:HGNC Symbol;Acc:HGNC:14529]
Coordinates
chr2:170715351-170718078:+
Coord C1 exon
chr2:170715351-170715563
Coord A exon
chr2:170715564-170716258
Coord C2 exon
chr2:170716259-170718078
Length
695 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
CTCCCTCGCCGCCTATGCAGGAC
3' ss Score
7.95
Exon sequences
Seq C1 exon
GCGAGCGAGCGGGGCGCGGCGAGGGGCAAGGGCGGGGAGGGCCCCGGCGCTCAGAGCAGGCGCCAGGGAGGCAGGCTGGGCGGCCCTTCGTCCTCGCCTTCGGGTGTCCATGCCTCGGCGGCGGCGTCCCGCTCCGCAGCCAGGGGCCTGCAAGCCGTAGCCATGGCCGCGGTGGCCGTCCTCCGGAACGACTCGCTGCAGGCCTTTCTCCAG
Seq A exon
GTCAGGGCCGAGCCCGGAGGGGGCGGGAGAAAGGTGGAAAGGGCCGTGTCCGGATCTCTCCTGGTACTCCGTGCACCTTGAACCTCAAAGGGAACCCCGCCGATGGGTGCAGCTGGAGCCAGGCCTAGGGGTGCCCACGCCAACTTCACACCTAATCCGGTGTGGCCTTTGCTGGAGGGACGCGTGGATCCGGGATTGTTCGGAGGTGCCCGGCTGGCCGAGAACAGGACCGGAGCTCACCCTGCTGGGCCCTCCTGCTGATTTCAGCCTGGGGCGGGCCAGGGAGGAGCGCGAAGGCAGTGAGGACAAGAGAGCTTAAAAGATGGGAGGGAGAGCGGCCGGCCGGCGGGGTTGTGGGTGTTTCCCGACTCTTACTGACCACGGAGCCGGGAGGGGCCCGTCGGATGCCTCCCCCTCCCACTTCGCGCCTGCTTCCTCTAAGGCTGGATGGCGTCTCAGTGCACCAAGTAGTTTAGCAAGAAGCGCTCGCGGGCCCCACGTTCAGGTAGCGCAGGCACCAAAAGTTTCCCTCGGCCGGTGGGTGCGTGCGTGGGGTGCGGTGGCGGGGGAGGGACGGCCGGGACGGAGGAGGGGCGGCGGTATAATAGCGGGCGTGGGGGCGGCGGGCTGGCCCGGAGTCCGCGCTTGGAGCTAACCTTTTGTCTCTTCTCCGCCCTCCCTCGCCGCCTATGCAG
Seq C2 exon
GACCGCACCCCCAGCGCCTCCCCGGACCTGGGCAAGCACTCGCCCCTGGCATTGCTGGCCGCCACCTGTAGCCGCATCGGCCAGCCGGGCGCGGCGGCGCCCCCGGACTTCCTGCAGGTGCCCTACGACCCCGCGCTGGGCTCACCCTCCAGGCTCTTCCACCCGTGGACCGCCGACATGCCGGCGCACTCGCCAGGCGCACTGCCGCCCCCGCATCCCAGCTTGGGGCTGACGCCGCAGAAGACGCACCTGCAGCCGTCCTTCGGGGCTGCGCACGAGCTTCCCCTTACACCCCCCGCCGACCCCTCGTACCCCTACGAGTTCTCGCCGGTCAAGATGCTGCCCTCGAGCATGGCGGCTCTGCCCGCCAGCTGCGCGCCCGCCTACGTGCCCTACGCGGCGCAGGCCGCGCTGCCGCCAGGCTACTCCAACCTGCTGCCTCCGCCGCCGCCACCGCCCCCGCCGCCCACCTGCCGCCAGTTGTCACCCAACCCGGCCCCCGACGACCTCCCGTGGTGGAGCATCCCGCAGGCGGGCGCCGGGCCGGGGGCCTCCGGGGTTCCGGGAAGCGGCCTCTCCGGCGCCTGTGCCGGGGCCCCCCACGCGCCCCGCTTCCCCGCCTCTGCGGCCGCTGCTGCTGCGGCCGCCGCCGCCCTACAAAGAGGCCTGGTGTTGGGCCCGTCGGACTTTGCGCAGTACCAGAGCCAGATCGCCGCGCTGCTGCAGACCAAGGCCCCCCTGGCGGCCACGGCCAGGAGGTGCCGCCGCTGCCGCTGTCCCAACTGCCAGGCGGCGGGCGGCGCCCCCGAGGCGGAGCCGGGGAAGAAGAAGCAGCACGTGTGCCACGTGCCGGGCTGCGGCAAGGTGTACGGGAAGACGTCGCACCTGAAGGCGCACCTGCGCTGGCACACGGGCGAGCGACCCTTCGTGTGCAACTGGCTCTTCTGCGGGAAGAGCTTCACGCGCTCGGACGAGCTGCAGCGGCACCTGCGGACTCACACGGGCGAGAAGCGCTTTGCCTGTCCCGAGTGCGGCAAGCGCTTCATGCGCAGCGACCACCTCGCGAAGCACGTCAAGACTCACCAGAATAAGAAGCTCAAAGTCGCTGAGGCCGGGGTTAAGCGGGAGGACGCGCGGGACCTGTGAGCCCTCCCGGAGGTGGACCCCCTTCCCAGCACCTCTGCGAGAGATCCGGGGACCTGTGGGCAGCTGGCGGAGGGGAGACTCAGCAGACGGACCCTCTCCGTTGCCTGCCTCCCAAAATGGAGCCAGGCTTCCAACTTCCGCTGCCTTCGGACATAGGGACCCAGTTCCCAGGAGCGGGGAGGTAGGGTTGGGGCTGGGGCATTTGGATTGTAATTGGGAGCTCTGCCGTACGCCAGGGCGGTTCCAAACTCTAAACCGTTCCCACCGTCAGGGAGACCTACAGTTTCGGGGGACCACCCTGGTCTGGCCTTGTATATAGGAAATGCTGCTGAACTGAATAGAAAGGAACTTGGGAGATTTGAAACAGTGCTCGGGTTTTCGCTAGGACCGGTTTGGGCTTTGTACAGGTTATTTAATAGCTTTGTTAAAGATAATTATAATAATTATAACATTAATAAAAATGTTGCTTTTGTCTTCAGCTCCATGCAGAGCTACAGCATGATATGTCTCTGTAAAGTGATCAGCAGTTGCAGCGTGAAAATAAATACTTTAACTCAGGGGTCACTACAGGAAGACCCCGTTGAGCCGGTCTCATTTGATCTTTTCTTCTTCTGGGTGGCTGTACTAAGCGGTCGGGTTTCCCCGGGAATTTGATGGTTCCTATAGTCTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204335:ENST00000375281:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.176 A=NA C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=7.3),PF134651=zf-H2C2_2=WD(100=6.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGGCCTTTCTCCAG
R:
CATCTTGACCGGCGAGAACTC
Band lengths:
358-1053
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains