HsaINT0157585 @ hg38
Intron Retention
Gene
ENSG00000152253 | SPC25
Description
SPC25, NDC80 kinetochore complex component [Source:HGNC Symbol;Acc:HGNC:24031]
Coordinates
chr2:168889387-168890445:-
Coord C1 exon
chr2:168890318-168890445
Coord A exon
chr2:168889534-168890317
Coord C2 exon
chr2:168889387-168889533
Length
784 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
AATATGTATTCTGTTTTTAGCAT
3' ss Score
7.15
Exon sequences
Seq C1 exon
AAGTGCACTAGGTTTGAAATCGGAAAGTTGGCGGGGCTGCGGGAGCTGAGCCTAGAGTCCGGCTGTTGGCTAGAGTGGGCGCGGATCTGGTGTGGGGAAGGCGGCGGGACTCAGGCCTGCCTGCGAAG
Seq A exon
GTAAGGGAGTTGGGCGCCGAGCTGGGCTCCTTGGCCCCCCTGTCGCAATAAGGGAAAGTGAATTTGAGGGCGGGATGTGTGTATTTGCGGCGGCGTTTGTGAAATGCGCATCTTGTTGCTGTTTGGGCCTCACAGCCTGGTGGGGTGGGCAGCTGCGAACCCAAAGCGTTCTGGGTTTCACTGCAGGAGGTATCTTTGGTCCTCCTGGGAAGGTTTTAGCGTCGCAGAGTACTGGTGGGTCCAGGATTCTCCCAGGACCTCCTTTTACAGAGGATACTGAGGCCCGAGGTGACTTGTATACATCCTCGACGGAACCTACTAAACTCCCACCTTAGTCCCTATTTTACTGTTAACTTTTACTGTTCTGAGGTGGAGGAGAGAGACAGGATAGATGTGTGGGGTCTTATTCTATGGGAGGGTGCCGGCCACCTGGCTATCCTGATGATCTCTGTTCAGAAAGGGTTAGAGTTGGATCAGGGGTTTCAGAAGTCAACAGTTTTACTTGTGAGAAAATGGACCCAGGGTCATAGTGCGTGTGAGTGTCCTGTGCAGTTACACTTACCTACTAACAAGCTGCTAGGAGGTAAAGGTGTCCTGAATTATTGCTGCACGTTAACAACAGTTAAGCCCAGGTGGCTTGATCTACCCTTGAATACCTAGAATTAAAGATAAGTTGCTATTTTCTAGCAAAGGACAAATTGCCAAAATACTGTATACCCGATTGGAATATGTGGGTGATTTGATTTCAGTAACTTAAAAAATGCAATATGTATTCTGTTTTTAG
Seq C2 exon
CATTGTCCTACATAATGGTAGAGGACGAACTGGCACTTTTCGATAAAAGCATAAATGAATTTTGGAATAAATTCAAAAGTACGGACACCTCCTGTCAGATGGCGGGACTAAGAGATACCTACAAGGATTCCATCAAAGCATTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000152253:ENST00000282074:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF083176=Spc7=PU(14.7=53.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCACTAGGTTTGAAATCGGA
R:
TGCAAATGCTTTGATGGAATCCT
Band lengths:
273-1057
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains