HsaINT0158810 @ hg19
Intron Retention
Gene
ENSG00000146700 | SRCRB4D
Description
scavenger receptor cysteine rich domain containing, group B (4 domains) [Source:HGNC Symbol;Acc:14461]
Coordinates
chr7:76030325-76033822:-
Coord C1 exon
chr7:76033624-76033822
Coord A exon
chr7:76030361-76033623
Coord C2 exon
chr7:76030325-76030360
Length
3263 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TCTTCCTCACTCTGTTTCAGCCA
3' ss Score
8.66
Exon sequences
Seq C1 exon
ATGTTCCAACTGTGACTTCTCCCTGGCGCCTTGATGGGAGCATCTGAAACACCCTTCACCATCTAGATGCACAAGGAAGCAGAGATGCTAATTGGTCCCCAGCTGGATGAGAAGCGCTGGGGGTGGAGGTTGGGAGATGGGAGTGCTGCCCCTCCCTTCCTCCCCCAAGCCCTGTCTTTCCTTCTCCTCCTGCCACTGG
Seq A exon
GTGAGTCCTCCCCTGTTAGCCCTTGCCACTTCCTCTTTCTGAATCTCAGTTGTCCCAGCTGTAACTTTATAGTAGGAGGAGGGTTGTGAATGAGCTCGTTCCTGTTGTTCTTTCCAATGCTGACCTTTGCCCAGAGTTGACAAAAGAGCTAAGAGTCTGAGTTTGGGGAATGAAGGGCTCAGTACTGGAGGTGACAGGTAAACGCACCCATGGAATGGGCAGTTAGGGGACACTGGGCACAGGGAAGGACAGAAAGAGGGTGTGCTCACCAATGGCTGTTGGAAAGACAGCTGGTAAAAGAGATGAAATCAAATGACCTAGGGACTATCCAAACATAAGAAGAAGGCCGGGCTCGGTGACTCACACCTGCAATCCCAGTACTTTGGGAGGCCAAGGCGGAAAGATCACCTGAGATCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCGCGTCCCTACTAAAAATACAAAAATTAACCAGGCTTGGCAGCACGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAAGTGGAGGTTGCAGTGAGCCAAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCTGTCTCAAAAAGAAATAAAGATAAATAAATAAATAAGAATAAGTTGAATCAGCCAGGCACGGTGGCTGTCGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGAGGGCGGATCATGAGGTCAGGAGTTCAGGACCAGCCCGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATAGCTGGGCATGGTGGCGGGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGTTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCTGAGATTGCGCCATTGCACTCCAGCCTGAGTGACAGGGCGAGACTCTGTCTCAAAAAAAAGAAGTGGAGTCTCAGTTTCTTCATCAGTAAAATGCGTACACAAGTACAGGCTGCAGGGGGTGGTTATAAGGAAAGTGTCAGAACTGTCATACTCGGACCACAAGTGAGGAATTATTTTCCGGCTTTCCATTTTGCCTGGTAGGCAAATTTCACTTCCCTGTTTCCTCTCCCACCTCCACTCTCAAGCATCGTGCTCAGAACTGCATGATGAAGAAGAGTGTGGCTGTCTGGGTAGTCTCTCAGCTCTACCCTTGATTTGCTACGTGGCCCTGAGTAAGTTGTCTAATCTCACTAACCCTGAAGTTGCCCTGTCTGTAAAATCCTGCCTAACTTATAAATTATCCTAATGATTAACTGAGTTCGCCTAAAGAAACCAATGAAGGCCGGGTGCAGTGGCTCACGCCTGTAATCCCAGCACTCTGGGAGGCTGAGGCGGATGGATCACCTGAGGTCGGGAGTTTGAGACCAGCCTGACCAACATGCAGAAACCCCATCTCTACTAAAAATACAAAATTAGCCAGGCATGGTGGTATGCCTGTAATCCCAGCTACTTGGGAGGTTGAGGCAGGAGAATCACTTGAACCCAGGAGGGGGAGGTTGCGGTGAGCAAAGATGGCACCATTGCACTCTAGCCTGGGCAACAAGAGCGAAATTCCGTCTCAAGAAAAACAAAAAAGAAAAAAAGAAAGCAATGAGGACATACATGATGGCTGAAGCAGAAAGACTCAAGGCCAGGCAAGGTGGCTCACACCTGTAATTCTAGCACTTTGGGAGGCTGAGACGGGAGGATCACTTGAGGCCAAGAGTTCGAGACCAGCCTGGGCAACAAAGTGAGACCCCTGTCTCTACAAAAAATTAAAAAATTAGGCCAGGAGCGGTGGCTCATGCCTGTAATCCTAGCACTTTGGGAGGCTGAGGCAGGCGGATCACTTGAGGTTAAGGGTTCAAGACTAGCCTGGCCAACATGGTGAGACCCCATTTCTACCTAAAAAATATAAAAATTAGCTGGGTGTGGCGGTGTGCGCCTGCAGTCCCAATTACTCGGGAGGCTGAGGTGGGAGAATCACTTGAACCCAGGAGGCAGAGGCTGCAGTGAGATGAGATCATGCCACTGTGCTCCAGCCTGAATGGAGTAAGACTCTGTCTCAAAAAAAAAAAAAAAAAATAGCTGGGCAGGGTGGCAGGAGCTTGTCCCAGCTATTCTGGAGGCTGAGGCGGGAGGATGGATTGAACTCCGGTATTGGAGGGTGCAGTGAGCTATGATCATGTCACTGCACTCCAGGCTGGGTGACAGACTGAGACACTGTCTTAAAAAGAAGAAGAAGAAGAAGAATGAAGTAGAAGGACTCATCTAGGTAAATCTTTAGGGAGGGAAATATGATGAATCCCAAAGCCAATTTACACATTTAAGGTGGAGCTACTGAACATCTGCTGAGTACCAGGTTCTGAGCGGAGAGTCTGGGGACACAGAGTTGAGACAGGCATGGCCACATTACCAGAGAAGGCCCTGAAAGAGGCCTGGGTATGTGGTGTCCAGGAATTCAGAGGAAACAGAGAGCACTTCTAGCTGAGGGCTCCAGGATGGCTTCCCAGAGGAAGGGGCTCCAAGCTGGGAATTGAAAAAAGCTCTTGCCTAGGTGTGTTGGCTCACACCTATAATCCCAGCACTTTAGCAGGCCAAAGTGGGTGGATTACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGCGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGACTTGGTGGTGTGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGAAGAATCGCTTGAACCCCAGAGGAAGAGGCTGCAGTGAGCTGAGATCGTGCCATTGCACTCCAGCCTGGGTGACAAGAGTGAGACTTTGTCTCAAAAAAAGAAAAGAAAAGAAAAAAGGCGAGGCTGGTCAGAATGGTTAGAAGATTCTAGAAGGTTTTGTAGTGAAAGCTCAGGAGCTGAGACTCCTGTAGGTAACAGGGGTCATTATGGGATTTAGCATTAGTTTGAGATGTGCAGATCTACAGATTTACACCCGCAGATCTCTCTAGGTTGGCCCAGGGACCACTAGGAGAGGGGTGAGGCAGGGAAGCCAATCAGGACAGTCAGAGAAAGAGACAATGGGGCTTTGGCAAAGCAGGGGTACTGAAGTCCAAGAAGATGGGGGTAATGTTGAGGACTGTGGGAGTTGGGGGGTGTGTTCCTGGGACCAGGGAGCCATGGTGTGGGCAGAGGGGCCAATGCTCTTCCTCACTCTGTTTCAG
Seq C2 exon
CCAGCGCCCTACAGCCCACTCCACTGCCCTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146700-SRCRB4D:NM_080744:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)