HsaINT0158810 @ hg38
Intron Retention
Gene
ENSG00000146700 | SSC4D
Description
scavenger receptor cysteine rich family member with 4 domains [Source:HGNC Symbol;Acc:HGNC:14461]
Coordinates
chr7:76401008-76404505:-
Coord C1 exon
chr7:76404307-76404505
Coord A exon
chr7:76401044-76404306
Coord C2 exon
chr7:76401008-76401043
Length
3263 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TCTTCCTCACTCTGTTTCAGCCA
3' ss Score
8.66
Exon sequences
Seq C1 exon
ATGTTCCAACTGTGACTTCTCCCTGGCGCCTTGATGGGAGCATCTGAAACACCCTTCACCATCTAGATGCACAAGGAAGCAGAGATGCTAATTGGTCCCCAGCTGGATGAGAAGCGCTGGGGGTGGAGGTTGGGAGATGGGAGTGCTGCCCCTCCCTTCCTCCCCCAAGCCCTGTCTTTCCTTCTCCTCCTGCCACTGG
Seq A exon
GTGAGTCCTCCCCTGTTAGCCCTTGCCACTTCCTCTTTCTGAATCTCAGTTGTCCCAGCTGTAACTTTATAGTAGGAGGAGGGTTGTGAATGAGCTCGTTCCTGTTGTTCTTTCCAATGCTGACCTTTGCCCAGAGTTGACAAAAGAGCTAAGAGTCTGAGTTTGGGGAATGAAGGGCTCAGTACTGGAGGTGACAGGTAAACGCACCCATGGAATGGGCAGTTAGGGGACACTGGGCACAGGGAAGGACAGAAAGAGGGTGTGCTCACCAATGGCTGTTGGAAAGACAGCTGGTAAAAGAGATGAAATCAAATGACCTAGGGACTATCCAAACATAAGAAGAAGGCCGGGCTCGGTGACTCACACCTGCAATCCCAGTACTTTGGGAGGCCAAGGCGGAAAGATCACCTGAGATCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCCGCGTCCCTACTAAAAATACAAAAATTAACCAGGCTTGGCAGCACGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAAGTGGAGGTTGCAGTGAGCCAAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCTGTCTCAAAAAGAAATAAAGATAAATAAATAAATAAGAATAAGTTGAATCAGCCAGGCACGGTGGCTGTCGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGAGGGCGGATCATGAGGTCAGGAGTTCAGGACCAGCCCGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAATAGCTGGGCATGGTGGCGGGCGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATTGTTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCTGAGATTGCGCCATTGCACTCCAGCCTGAGTGACAGGGCGAGACTCTGTCTCAAAAAAAAGAAGTGGAGTCTCAGTTTCTTCATCAGTAAAATGCGTACACAAGTACAGGCTGCAGGGGGTGGTTATAAGGAAAGTGTCAGAACTGTCATACTCGGACCACAAGTGAGGAATTATTTTCCGGCTTTCCATTTTGCCTGGTAGGCAAATTTCACTTCCCTGTTTCCTCTCCCACCTCCACTCTCAAGCATCGTGCTCAGAACTGCATGATGAAGAAGAGTGTGGCTGTCTGGGTAGTCTCTCAGCTCTACCCTTGATTTGCTACGTGGCCCTGAGTAAGTTGTCTAATCTCACTAACCCTGAAGTTGCCCTGTCTGTAAAATCCTGCCTAACTTATAAATTATCCTAATGATTAACTGAGTTCGCCTAAAGAAACCAATGAAGGCCGGGTGCAGTGGCTCACGCCTGTAATCCCAGCACTCTGGGAGGCTGAGGCGGATGGATCACCTGAGGTCGGGAGTTTGAGACCAGCCTGACCAACATGCAGAAACCCCATCTCTACTAAAAATACAAAATTAGCCAGGCATGGTGGTATGCCTGTAATCCCAGCTACTTGGGAGGTTGAGGCAGGAGAATCACTTGAACCCAGGAGGGGGAGGTTGCGGTGAGCAAAGATGGCACCATTGCACTCTAGCCTGGGCAACAAGAGCGAAATTCCGTCTCAAGAAAAACAAAAAAGAAAAAAAGAAAGCAATGAGGACATACATGATGGCTGAAGCAGAAAGACTCAAGGCCAGGCAAGGTGGCTCACACCTGTAATTCTAGCACTTTGGGAGGCTGAGACGGGAGGATCACTTGAGGCCAAGAGTTCGAGACCAGCCTGGGCAACAAAGTGAGACCCCTGTCTCTACAAAAAATTAAAAAATTAGGCCAGGAGCGGTGGCTCATGCCTGTAATCCTAGCACTTTGGGAGGCTGAGGCAGGCGGATCACTTGAGGTTAAGGGTTCAAGACTAGCCTGGCCAACATGGTGAGACCCCATTTCTACCTAAAAAATATAAAAATTAGCTGGGTGTGGCGGTGTGCGCCTGCAGTCCCAATTACTCGGGAGGCTGAGGTGGGAGAATCACTTGAACCCAGGAGGCAGAGGCTGCAGTGAGATGAGATCATGCCACTGTGCTCCAGCCTGAATGGAGTAAGACTCTGTCTCAAAAAAAAAAAAAAAAAATAGCTGGGCAGGGTGGCAGGAGCTTGTCCCAGCTATTCTGGAGGCTGAGGCGGGAGGATGGATTGAACTCCGGTATTGGAGGGTGCAGTGAGCTATGATCATGTCACTGCACTCCAGGCTGGGTGACAGACTGAGACACTGTCTTAAAAAGAAGAAGAAGAAGAAGAATGAAGTAGAAGGACTCATCTAGGTAAATCTTTAGGGAGGGAAATATGATGAATCCCAAAGCCAATTTACACATTTAAGGTGGAGCTACTGAACATCTGCTGAGTACCAGGTTCTGAGCGGAGAGTCTGGGGACACAGAGTTGAGACAGGCATGGCCACATTACCAGAGAAGGCCCTGAAAGAGGCCTGGGTATGTGGTGTCCAGGAATTCAGAGGAAACAGAGAGCACTTCTAGCTGAGGGCTCCAGGATGGCTTCCCAGAGGAAGGGGCTCCAAGCTGGGAATTGAAAAAAGCTCTTGCCTAGGTGTGTTGGCTCACACCTATAATCCCAGCACTTTAGCAGGCCAAAGTGGGTGGATTACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGCGAAACCCCATCTCTACTAAAAATACAAAAATTAGCTGGACTTGGTGGTGTGCACCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGAAGAATCGCTTGAACCCCAGAGGAAGAGGCTGCAGTGAGCTGAGATCGTGCCATTGCACTCCAGCCTGGGTGACAAGAGTGAGACTTTGTCTCAAAAAAAGAAAAGAAAAGAAAAAAGGCGAGGCTGGTCAGAATGGTTAGAAGATTCTAGAAGGTTTTGTAGTGAAAGCTCAGGAGCTGAGACTCCTGTAGGTAACAGGGGTCATTATGGGATTTAGCATTAGTTTGAGATGTGCAGATCTACAGATTTACACCCGCAGATCTCTCTAGGTTGGCCCAGGGACCACTAGGAGAGGGGTGAGGCAGGGAAGCCAATCAGGACAGTCAGAGAAAGAGACAATGGGGCTTTGGCAAAGCAGGGGTACTGAAGTCCAAGAAGATGGGGGTAATGTTGAGGACTGTGGGAGTTGGGGGGTGTGTTCCTGGGACCAGGGAGCCATGGTGTGGGCAGAGGGGCCAATGCTCTTCCTCACTCTGTTTCAG
Seq C2 exon
CCAGCGCCCTACAGCCCACTCCACTGCCCTTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146700:ENST00000275560:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains