HsaEX0061665 @ hg38
Exon Skipping
Gene
ENSG00000146700 | SSC4D
Description
scavenger receptor cysteine rich family member with 4 domains [Source:HGNC Symbol;Acc:HGNC:14461]
Coordinates
chr7:76400286-76404505:-
Coord C1 exon
chr7:76404307-76404505
Coord A exon
chr7:76401008-76401043
Coord C2 exon
chr7:76400286-76400591
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTCACTCTGTTTCAGCCA
3' ss Score
8.66
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ATGTTCCAACTGTGACTTCTCCCTGGCGCCTTGATGGGAGCATCTGAAACACCCTTCACCATCTAGATGCACAAGGAAGCAGAGATGCTAATTGGTCCCCAGCTGGATGAGAAGCGCTGGGGGTGGAGGTTGGGAGATGGGAGTGCTGCCCCTCCCTTCCTCCCCCAAGCCCTGTCTTTCCTTCTCCTCCTGCCACTGG
Seq A exon
CCAGCGCCCTACAGCCCACTCCACTGCCCTTTCAAG
Seq C2 exon
AGCTGAGGCTGGTGGGGGGCCCCAGCCGCTGCCGGGGCCGCCTGGAAGTCATGCACGGTGGCTCCTGGGGCAGCGTCTGTGATGACGACTGGGACGTGGTGGACGCCAACGTAGTGTGTCGCCAGCTGGGCTGTGGCCTGGCACTGCCCGTGCCACGGCCCCTTGCCTTTGGCCAAGGCCGAGGCCCCATCCTGCTGGACAACGTGGAGTGCCGCGGGCAGGAAGCTGCGCTGAGCGAGTGCGGCAGCCGCGGCTGGGGCGTCCACAATTGCTTTCACTACGAGGATGTGGCTGTCCTGTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146700-'2-5,'2-4,5-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053013=SRCR=WD(100=95.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCTTCTCCTCCTGCCACT
R:
GTCCCAGTCGTCATCACAGAC
Band lengths:
118-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development