BtaEX6110375 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003020 | SSC4D
Description
scavenger receptor cysteine rich family, 4 domains [Source:HGNC Symbol;Acc:HGNC:14461]
Coordinates
chr25:34938160-34940479:-
Coord C1 exon
chr25:34940314-34940479
Coord A exon
chr25:34938715-34938750
Coord C2 exon
chr25:34938160-34938465
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTCACTCTGTTCCAGCTG
3' ss Score
9.78
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATGGGACCACTGGAAAGACCACCCATTGGCTGGACACACAAGGAAGCAGAGATGCACACTGGTCCCCAGCCTGATGAGAGGAGCAGAGGACGGGGGTCCGGAGACAGGAGCACTGCCCCTCCCCCTCTCCCCCCAGCCCTGTCCTTCCTCCTCCTATTGCCACTGG
Seq A exon
CTGGTGCCCTACAGCCCACCTCACTGCCCTTTCCAG
Seq C2 exon
AACTCAGGCTGGTGGGGGGCCCGAGCCGCTGCCGGGGCCGCCTGGAGGTCCTACACGGGGGCTCCTGGGGCAGCGTCTGTGACGACGACTGGGACGTGGTGGACGCCAATGTGGTGTGTCGTCAGCTGGGCTGCGGCCTGGCGCTGCCCGTGCCCCGGCCCCTCGCCTTCGGCCAGGGCCGAGGCCCCATCCTGCTGGACAACGTGGAGTGCCGCGGGCAGGAAGCCGCCCTGAGCGAGTGCGGCAGCCGAGGCTGGGGCGTGCACAACTGCTTCCACTATGAGGACGTGGCGGTCCTGTGTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003020-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053013=SRCR=WD(100=95.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCCTCCTATTGCCACTGG
R:
TCCCAGTCGTCGTCACAGAC
Band lengths:
115-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]