GgaEX6017107 @ galGal4
Exon Skipping
Gene
ENSGALG00000001917 | SSC4D
Description
scavenger receptor cysteine rich family, 4 domains [Source:HGNC Symbol;Acc:HGNC:14461]
Coordinates
chr19:4219061-4221605:+
Coord C1 exon
chr19:4219061-4219114
Coord A exon
chr19:4220284-4220316
Coord C2 exon
chr19:4221300-4221605
Length
33 bp
Sequences
Splice sites
3' ss Seq
CTGTTCCTTCTCTGTTTCAGGGA
3' ss Score
12.86
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGGGGCACTGCCTTCCTCCCTGCTCCTCCTCCTCTTCCTCCTCGGCCCCACTG
Seq A exon
GGACCTCCGAGCCCTCCCCGCCGCCGCTCCCAG
Seq C2 exon
AGCTGCGCCTGGCCAACGGGCCCAGCCGGTGCCAGGGCCGCGTGGAGATCCTCTACAACGGATCCTGGGGCACGGTGTGCGACGACGACTGGGACATCGTAGACGCCAACGTGGTGTGTCGCCAGCTGGGCTGCGGCCACGCCATCGCCATGCCGGCACCCATGACCTTCGGCCAGGGGAGCGGGCCCATCTTCTTGGACAACGTGGACTGCAAGGGCCAGGAGGCGGCACTGAGCGAGTGCTGGAGCCACGGATGGGGCGTCCACAACTGCTACCACTACGAGGACGTGGCTGTCGTCTGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001917-'2-3,'2-2,3-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.583 C2=0.039
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053013=SRCR=WD(100=95.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTCCCTGCTCCTCCTC
R:
CCCCAGGATCCGTTGTAGAGG
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]