RnoEX0086271 @ rn6
Exon Skipping
Gene
ENSRNOG00000001435 | Ssc4d
Description
scavenger receptor cysteine rich family member with 4 domains [Source:RGD Symbol;Acc:1306970]
Coordinates
chr12:23752844-23755363:+
Coord C1 exon
chr12:23752844-23753009
Coord A exon
chr12:23754868-23754903
Coord C2 exon
chr12:23755058-23755363
Length
36 bp
Sequences
Splice sites
3' ss Seq
CCCTGTCTGGTCTGTTTCAGCGA
3' ss Score
10.72
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATGGGACCGCCTGAAAGGCCATCCCTTGGCTGGACACCCAAGGAAGCAGACATGCAAAGTGGCCCCCAGCCCGATGAATGGAGCAGTGGATGGAAGCCTGGGGATGGGGGTGCTGCCCCCTTGCCCCTCTCCCCAGCACTGTCCTTCCTTCTTCTGTTCCCACTGG
Seq A exon
CGAGTGCCCTCCAGCCCACTCCTCTGCCCTTTCCAG
Seq C2 exon
AGCTGAGGCTGGTAGGGGGTCCAAGCCGCTGCCGAGGGCGCCTGGAGGTCATGCACAGCGGTTCCTGGGGCAGCGTTTGCGACGATGACTGGGACGTTGTGGATGCCAACGTGGTGTGTCGTCAGCTGGGCTGTGGCCTGGCATTGCCGGTGCCGCGGCCCCTCACCTTTGGCCAGGGCAGAGGGCCCATTTTCCTGGATAATGTGGAATGCCGCGGGCAGGAAGCGTCTCTGAGCGAGTGTGGCAGCAGGGGCTGGGGTGTCCACAACTGCTTTCACTATGAAGATGTGGCGGTCCTGTGTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001435_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.661 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053013=SRCR=WD(100=95.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCTTCTGTTCCCACTGG
R:
CACAACGTCCCAGTCATCGTC
Band lengths:
122-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]