GgaEX6017107 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr19:4187102-4189748:+
Coord C1 exon
chr19:4187102-4187155
Coord A exon
chr19:4188325-4188357
Coord C2 exon
chr19:4189451-4189748
Length
33 bp
Sequences
Splice sites
3' ss Seq
CTGTTCCTTCTCTGTTTCAGGGA
3' ss Score
12.86
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGGGGCACTGCCTTCCTCCCTGCTCCTCCTCCTCTTCCTCCTCGGCCCCACTG
Seq A exon
GGACCTCCGAGCCCTCCCCGCCGCCGCTCCCAG
Seq C2 exon
AGCTGCGCCTGGCCAACGGGCCCAGCCGGTGCCAGGGCCGCGTGGAGATCCTCTACAACGGATCCTGGGGCACGGTGTGCGACGACGACTGGGACATCGTAGACGCCAACGTGGTGTGTCGCCAGCTGGGCTGCGGCCACGCCATCGCCATGCCGGCACCCATGACCTTCGGCCAGGGGAGCGGGCCCATCTTCTTGGACAACGTGGACTGCAAGGGCCAGGAGGCGGCACTGAGCGAGTGCTGGAGCCCACGGGATGGGGCGTCCACAACTGCTACCCACTACGAGGACGTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001917-'2-4,'2-3,3-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.219 A=0.750 C2=0.140
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0053013=SRCR=WD(100=96.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTCCCTGCTCCTCCTC
R:
CCCCAGGATCCGTTGTAGAGG
Band lengths:
112-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]