HsaEX0061664 @ hg38
Exon Skipping
Gene
ENSG00000146700 | SSC4D
Description
scavenger receptor cysteine rich family member with 4 domains [Source:HGNC Symbol;Acc:HGNC:14461]
Coordinates
chr7:76398720-76409695:-
Coord C1 exon
chr7:76409414-76409695
Coord A exon
chr7:76404307-76404505
Coord C2 exon
chr7:76398720-76398797
Length
199 bp
Sequences
Splice sites
3' ss Seq
TTTGGGATCTTTAATTTCAGATG
3' ss Score
7.67
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
TTTTCTGGGGCCGCTCCAGCTGGTGCCGGCCACCTCCACTCCCCTTTGCTTCTTGCTGTCCCTAAGGTCGGATGGGGACAGGCTGGGGCCACCAGCCAGCTCCATGGACAGGGACTTTGCCTCTGCTCACCTTCCAGCTGTGGAAAGAAAAGAAGAAACGCCTGTGTTGATTTCCATTTGGAAGATCCTTCCTCCTCCTAAACTTCCAGGGGCAGACAAAGTGATTCGATCTTGGATTGACTGTAGAAGAAGGGACAGAAAGAGCCCAGAACATTCCCCCAG
Seq A exon
ATGTTCCAACTGTGACTTCTCCCTGGCGCCTTGATGGGAGCATCTGAAACACCCTTCACCATCTAGATGCACAAGGAAGCAGAGATGCTAATTGGTCCCCAGCTGGATGAGAAGCGCTGGGGGTGGAGGTTGGGAGATGGGAGTGCTGCCCCTCCCTTCCTCCCCCAAGCCCTGTCTTTCCTTCTCCTCCTGCCACTGG
Seq C2 exon
AATTCTTGCCAACGCAGCCCCCAACAAGGAAGATGTTAACCAGTAGAGCACCTCCTACGACACTGCCGAATGGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146700_MULTIEX2-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.022 C2=0.667
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGACAGGGACTTTGCCTC
R:
TTTTCCATTCGGCAGTGTCGT
Band lengths:
257-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development