MmuEX6021625 @ mm10
Exon Skipping
Gene
ENSMUSG00000029699 | Ssc4d
Description
scavenger receptor cysteine rich family, 4 domains [Source:MGI Symbol;Acc:MGI:1924709]
Coordinates
chr5:135968224-135974531:-
Coord C1 exon
chr5:135974262-135974531
Coord A exon
chr5:135970182-135970465
Coord C2 exon
chr5:135968224-135968259
Length
284 bp
Sequences
Splice sites
3' ss Seq
CCTGTCTTTGCCTCCACCAGGAA
3' ss Score
9.65
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
TCCTCCGGGGCTGCTCACCACACTGCGGACCACTTCCACTGTCCCTTAGCCTCTCTGCCCCCAAGGTCAGGTGGGGACAGGCTGGGGCCACCGGCAGCTCCATGGCCAAGGACACTGCCTCTTCTCTCCTTCTAGCTACGGAAAGAAAAGAAGAAAAGTCTGTGCTGATCTGTATCTCGGGGGCCCTTCCCCCTCCTAAAGTCCCTGGAGCAGAGGCAGTGATTGAAACTTGGATTATCTGGAGGGAAAGAACCCAGAACATCCCTACAG
Seq A exon
GAATGTCAACCCCATGTGGATATGTCCTTCCCCCTGCAGCTGGCCCAGGCAGCTGGAAGTAAACACGCAGGACCTTGAGTCACAGATGTTCCAGCTGTGACTTCTCCTCAGATTCTTGATGGGACCGTCGGAAAGGCCATCCATTGGCTGGACACCCAAGGAAGCAGAGATGCAAATTGGCCCCCAGCCTGATGGATGGAGCAGGGGATGGAAGCCTGGGGACAGGGGTGCTGTCCCCCTGCCCCTCTCCCCAGCACTGTCCTTCCTCCTTCTGTTCCCACTGG
Seq C2 exon
CCAGTGCCCTCCAGCCCACTCCGCTGCCCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029699-'1-4,'1-1,2-4=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.625 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACCACACTGCGGAC
R:
TGGAAAGGGCAGCGGAGT
Band lengths:
293-577
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types