BtaEX0034637 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003020 | SSC4D
Description
scavenger receptor cysteine rich family, 4 domains [Source:HGNC Symbol;Acc:HGNC:14461]
Coordinates
chr25:34938715-34942630:-
Coord C1 exon
chr25:34942530-34942630
Coord A exon
chr25:34940314-34940511
Coord C2 exon
chr25:34938715-34938750
Length
198 bp
Sequences
Splice sites
3' ss Seq
CCTGGAACATTTAATTCCAGATG
3' ss Score
4.35
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
AGATCCTTCCCCGTCCTAAACTTCTGGAGGCAGGAAAAAGGGATTTGACCTTGGATTGACTATAAAATAAGGAACAGAGAGAACCTAGAACCTTCCCACAG
Seq A exon
ATGTCCCAGCTGTGACTTCTCACTGCACCTTGATGGGACCACTGGAAAGACCACCCATTGGCTGGACACACAAGGAAGCAGAGATGCACACTGGTCCCCAGCCTGATGAGAGGAGCAGAGGACGGGGGTCCGGAGACAGGAGCACTGCCCCTCCCCCTCTCCCCCCAGCCCTGTCCTTCCTCCTCCTATTGCCACTGG
Seq C2 exon
CTGGTGCCCTACAGCCCACCTCACTGCCCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003020-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.750 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCGTCCTAAACTTCTGGA
R:
CTGGAAAGGGCAGTGAGGTG
Band lengths:
130-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development