HsaEX0061664 @ hg19
Exon Skipping
Gene
ENSG00000146700 | SRCRB4D
Description
scavenger receptor cysteine rich domain containing, group B (4 domains) [Source:HGNC Symbol;Acc:14461]
Coordinates
chr7:76028037-76039012:-
Coord C1 exon
chr7:76038731-76039012
Coord A exon
chr7:76033624-76033822
Coord C2 exon
chr7:76028037-76028114
Length
199 bp
Sequences
Splice sites
3' ss Seq
TTTGGGATCTTTAATTTCAGATG
3' ss Score
7.67
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
TTTTCTGGGGCCGCTCCAGCTGGTGCCGGCCACCTCCACTCCCCTTTGCTTCTTGCTGTCCCTAAGGTCGGATGGGGACAGGCTGGGGCCACCAGCCAGCTCCATGGACAGGGACTTTGCCTCTGCTCACCTTCCAGCTGTGGAAAGAAAAGAAGAAACGCCTGTGTTGATTTCCATTTGGAAGATCCTTCCTCCTCCTAAACTTCCAGGGGCAGACAAAGTGATTCGATCTTGGATTGACTGTAGAAGAAGGGACAGAAAGAGCCCAGAACATTCCCCCAG
Seq A exon
ATGTTCCAACTGTGACTTCTCCCTGGCGCCTTGATGGGAGCATCTGAAACACCCTTCACCATCTAGATGCACAAGGAAGCAGAGATGCTAATTGGTCCCCAGCTGGATGAGAAGCGCTGGGGGTGGAGGTTGGGAGATGGGAGTGCTGCCCCTCCCTTCCTCCCCCAAGCCCTGTCTTTCCTTCTCCTCCTGCCACTGG
Seq C2 exon
AATTCTTGCCAACGCAGCCCCCAACAAGGAAGATGTTAACCAGTAGAGCACCTCCTACGACACTGCCGAATGGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146700_MULTIEX2-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.011 C2=0.667
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGACAGGGACTTTGCCTC
R:
TTTTCCATTCGGCAGTGTCGT
Band lengths:
257-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)