HsaINT0158972 @ hg19
Intron Retention
Gene
ENSG00000075142 | SRI
Description
sorcin [Source:HGNC Symbol;Acc:11292]
Coordinates
chr7:87837822-87838767:-
Coord C1 exon
chr7:87838654-87838767
Coord A exon
chr7:87837881-87838653
Coord C2 exon
chr7:87837822-87837880
Length
773 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTTACTGTGTTGTTTTACAGACA
3' ss Score
10.46
Exon sequences
Seq C1 exon
GATTTAGGTTGAGTCCCCAGGCTGTGAATTCAATTGCAAAACGATACAGCACCAATGGAAAGATCACCTTCGACGACTACATCGCCTGCTGCGTCAAACTGAGGGCTCTTACAG
Seq A exon
GTGAGTTCTATAAGGTCGTGTCATCACCACAAGCCAAGACACAGTTTTTATTACATTTCATCTCTCAGTGCTTCTCAACTTTTATTCTTCCCAAATTTTTTCTTGCTTTAGTAGTTTTTTTCAGATTACTATTAAGCATATCTGGCAAAATAATTTTTTGGTTTTTTTTCCAGAATTTATTTTAGATTAGTAAGTAATCTGCCATTAAAATAAACAATTAAATTTTACTAAAATGTTCTAAAACACAATCAGCTAACTTGTGCATTTTTGATCAGATAATAATGAATTTTTCCCCAGAATGTGAAATATTTGGAAAGAGTGAAATTAAAATAAAATCCTTTTCTATAGGGCAGAGCTGAAATGGTAGAGAAACTGATTACAGCCCATTTGTTATATTGGGGACTCTTTATCTGTTTCTTAAGCAGTATCTTTGTTATTAAGAAGCTAGAAATTCGGTGCTTTTATCACAATGAAGTAATGGCCATGGAAGTTGCACAGCTTTTACTGACTTTGGGTAAGGTATTTTCTCCAGATCTAAAAAAACAAAAAAACAAAAAACACAGCTGGCCAACTTCTGCCTGTTACTTTGTTGCATATTAAATCTTTTACTATTCATATAGTTGGCTTCTTTGCTTTGGTCTTTTGTTTATGTTAATTGGTTGCACAATTTAAATGTTACTGCAATGTGAATTCAATGCCAAAATAACTAACTTTTATGATTTTAGAAAAACCATTTAAAGAAAAACCATAAATTTTACTGTGTTGTTTTACAG
Seq C2 exon
ACAGCTTTCGAAGACGGGATACTGCTCAGCAAGGTGTTGTGAATTTCCCATATGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000075142-SRI:NM_003130:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(50.0=76.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)