MmuINT0152371 @ mm9
Intron Retention
Gene
ENSMUSG00000003161 | Sri
Description
sorcin [Source:MGI Symbol;Acc:MGI:98419]
Coordinates
chr5:8063637-8064616:+
Coord C1 exon
chr5:8063637-8063750
Coord A exon
chr5:8063751-8064557
Coord C2 exon
chr5:8064558-8064616
Length
807 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
TGTACTATGTTGTTTTGCAGATA
3' ss Score
10.22
Exon sequences
Seq C1 exon
GATTCAGGTTGAGCCCCCAAACTGTGAATTCAGTTGCAAAGCGATACAGCACCAGCGGGAAGATCACGTTTGATGACTACATTGCCTGCTGTGTCAAACTGAGGGCTCTCACAG
Seq A exon
GTTGGTCACTGAAGCCATTCAGGATTGCCAGGAGCCAAGAAGACCCTTTTTTATGGCTTTTGTCATTTCTCCATATCTCTGAACTTCTGTTCTGCCTAGTTTTTTATGAGTTTAGGGGGTGCTTCAGCAGACCCTTAGCACAGCTATTAAGCAAGTGGATCGTAATTCAGAGGGGTTTTTGTTGTTGTTGTTGGTTTGTTTTTGTTTTAGACGAATGAGTAATCATAGTACATTTTGTTAAAATGCTGCAGATATAGCTGTCTTTTGTAAGTGCATTTGTTTATGGTGCTAGGGCTACAAAGGGCTCACACATGCTCAGTAAACTTTAGGCCACTGTGCTGCCCGCACAGCCTGAGTTGTACAGTATCTATCAGTCACAGAGTGCAGTTATGAGTAATTCTTTCAACTGTGGGACGTTCACAAAGAGTAAAATTAAAGTGAGTCGTTTTTGACCAGCAGGGCTGAAGTTGGTGGGATATTTGGTCATAGCCCACTTGTATCAGCTTCTGTTATTTTAAGCAGCATGCATGCTATTACAGTGTTGAGAATCCCGTGCTTTCATAACAGTTTAAGGGCCTTGAAGGCTAAACTGCTTTTACCAGCTGAGGTTGATCATTTGTCTTAGATCCACATTGAAAATGACCATTGACCACTTTCGGTCACTGTTACATATTGACTAGTTGTAGAATTTACTTGTTATTGACATTTGATACCAATGCCAAGTAGTTAGCTGCTGTGAGTTTAGAAAAGCTGTTTAAGGAAAAAAAAAAAAACCTACATTTTACTATGTACTATGTTGTTTTGCAG
Seq C2 exon
ATAGCTTTCGCAGACGGGATTCGGGTCAACAAGGAGTTGTGAATTTCTCGTATGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003161-Sri:NM_025618:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(50.0=76.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: