HsaINT0159708 @ hg19
Intron Retention
Gene
ENSG00000149418 | ST14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:HGNC Symbol;Acc:11344]
Coordinates
chr11:130066465-130067840:+
Coord C1 exon
chr11:130066465-130066595
Coord A exon
chr11:130066596-130067735
Coord C2 exon
chr11:130067736-130067840
Length
1140 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
AGGCCTGCCTGTGCCCGCAGCAT
3' ss Score
7.38
Exon sequences
Seq C1 exon
ATACTGCGGAGAGAGGTCCCAGTTCGTCGTCACCAGCAACAGCAACAAGATCACAGTTCGCTTCCACTCAGATCAGTCCTACACCGACACCGGCTTCTTAGCTGAATACCTCTCCTACGACTCCAGTGACC
Seq A exon
GTGAGTGAACATTGTTGGGAGGAGGGCTGGCGGGGGCCTGCACCGCATGTTCTGTCTACCCTGCATCTCGTTAGCATCGTGCTTTGCTGATTCTAAAATGCTGGAGAATGTAAGAGCATCTCACCCCTCCCGTAGCTTTGGGAGGAAAACACGCTACCTTTGATGCATTAATGAAAGCAGGCTGGCTGTGAGCGCTGGCACACACTGTGTCCTTCTGGGTTGCAGTCCCAGCATGAGGTACCTGCGGCTGGAGACGCCCCTCATCTGAGCTTCCCCGGCCATCTGTCCCTCAGGCCCACCTTCACCGTGACTTTGATCATCTGTGCTTGCCTCTGTGGCCTGTTAGCACCGTTAGGATTCACAGTGTAATTCTGAGACACATGAGGAAGTGCCATTGGCTGTATGAGCAGTGGTTTTTCCACATATGCAATGTGTTTTTATTTCAACCCTGCGTCATAGAATAACCTTGGGAAGACATTTAACTATGCTTAGGAATCCAACTTTAAGGTAAAATTCAAGGGCCTGGCTCACCACCAAAAGTACACTTGGATGAACCAACGCCTTTGATCTAAACACTTACCTGTGACCGAAGTGTCCCTGTGCCGAGGCGGTGACAATGGTCTCCTTACAGCTTTGTCATCTGCAAAGTGGTCAGATGCCTCCGGATTTCAGAAACATTGAAATATGGAAAATGTTTAGGGTGAAGGAAGTGCGCGATGCCGCACTACATTTGGATAGGACACATCACATGCATCGGGGACCAGCTGAGCGTCACAGGCGGGGCCTGGCCCTCAGGGGCACCAGGCAGCCCAGCACACAGGGCAGGGCAGGGCAGGGCCTGCGACCAGCTGGCCTCTCTGCAGGGCACCTGGGGCTTCCTGGGCTTCGATCCTCAGTGGTGGGGAGGGACCCTGCCAGCCCAGGTTGGGGTCTGTGGCCAGCCCTCTTCCCACACTAGCTGCGGGTGCAGGAACCCCTTTGTCACAGCTTGGTGGGCCTGGGTAACCCCTGCCCTGGGCCACAGCACCTGCCCTGCTCCTGTGTGTTTGTGGCTGGGAGGTTGGCCCGAGGGAGGGAGCCGGGAGCCAGCGGAGGGAGGTGGGTGGGTGCTGGGGGCCTCAGGCCTGCCTGTGCCCGCAG
Seq C2 exon
CATGCCCGGGGCAGTTCACGTGCCGCACGGGGCGGTGTATCCGGAAGGAGCTGCGCTGTGATGGCTGGGCCGACTGCACCGACCACAGCGATGAGCTCAACTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149418-ST14:NM_021978:11
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(34.3=80.0),PF0005713=Ldl_recept_a=PU(2.8=2.2)
A:
NA
C2:
PF0005713=Ldl_recept_a=PD(94.4=94.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACTGCGGAGAGAGGTCCCA
R:
TGCAGTTGAGCTCATCGC
Band lengths:
236-1376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)