RnoINT0144081 @ rn6
Intron Retention
Gene
ENSRNOG00000005903 | St14
Description
suppression of tumorigenicity 14 [Source:RGD Symbol;Acc:69288]
Coordinates
chr8:32245146-32248100:-
Coord C1 exon
chr8:32247970-32248100
Coord A exon
chr8:32245251-32247969
Coord C2 exon
chr8:32245146-32245250
Length
2719 bp
Sequences
Splice sites
5' ss Seq
ACCGTGAGT
5' ss Score
9.4
3' ss Seq
CTCTCTCTACACCCCTACAGCAT
3' ss Score
7.2
Exon sequences
Seq C1 exon
GTTCTGCGGTGAGAGGTCCCAGTTTGTGGTGAGCAGCAACAGCAGCAAGATTACGGTCCACTTCCATTCTGATCACTCGTACACGGACACCGGGTTCCTGGCTGAGTATCTCTCCTACGACTCCAATGACC
Seq A exon
GTGAGTGAATGCGACTGCTGATGGCGGGCGGTTGGCGGGATTGGCGCAGGAAGTCCTCTCTGCTCTGTTCTGTCCTACGCTGTGCTTCCTCCGAGAGGACGGAGACTCAGATGCATCCCACTGCGGTAGCTTTAGAGGAAAGCAAGTCTGTTTACTCCAAAAAAAGGCTGGGCTAGGGGTGTTGCTCTGTGTTAAGAGCGGTTGCGAGCCTCTGGGTTCGATCCGCAGCGCGAGAACAGGAGAATGAGAGCAAACGCTGGTACATCCTGTGCTTCTCGGGGCTGCTTCCCATGGTGCTTCTCGGGGCTGCTTCCCATGGTGCTTCTCGGGGCTGCTTCCCATGGTGCTTCTCGGGGCTGCTTCCCATGGTGCTTCTCGGGGCTGCTTCCCATGTGCTACAAAGGAGCCCTAGGACCCTGCTTACCAACTTCCTGGGGCCACAGTGACTTTGGTAATCTGTGCTTCCCCTGAGAATCTATTAGCCTTTTAGGATTACTTTGGAGTGTTGAGACATTAGAAAACACTATTAGCTCCGTGAACAGCAATTCGTTGGCCTACAGAGCACTGATTGAGTCCCATATCTAAAATGCGTGGGACTAGACGTGTGGTGGACTTCAGGTTTAAACCTTTCTGCACGTACACCGTGGATCTTGGAAATAGGACCCAAGTCTAAACGTGGAATCTGGGGCTGCGGAGAAAGCTGAGATGGTAGAGTTCTTGCTGCCTAGCATGAGGCATTTGGATCATCAACACCCACACAGAAACTGGGTTGTGTGCCCATAACTCAGAGCCGGGGAGGCAGACACAGGAGCCTGCTTGTTAACCAGTATAGCTGAATCGATGTGCTCCAGGCTCAACAAGAAAGCCTGAATCCCCCCCCCCCCCCCGCAAAAGGTGGAACAGGATTGAGGAAGACCTTACTTACATTGCCTTCCTGCCTCTGTGTTCACAGACGGATATGCACCCATAGGCACAGGAATATGTTCACATATGGCATGCACACACACACACACACACACACACACACACACACACAATGAAGCTCAGTTTTTTTCTTGGGCCTCATCAGAGCATCATATCAGCACACCTGTGTTTTCTCTGGTCACATGAGGTCACATGGGGTCACATGAGGTCAGGTATGTGCCTTCCCACCTGTGGCATCATGTCAGCTCTGAAAAAACCTCAAGTTCTGCGGCCTTCTGGGCCTGGGTGTTTTGTCTGAGGGATGTTCAACCTGCAGGTTTTTTTTTTTTTTTTTTGGTTCTTTTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGTGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCCAACCTGCAGGTTTTAATTTCAACCCTGTATCATGGAATAACCCTTTGGAAGGCATTTTAAGTACTGAAAGTCACGTTTAATTTAAAATGTAACTGCAGGGGCTGGAGAGATTGTAAGGGCCTCAGAGTTGGATCAGGACACCCCATGACCAAGTTCTCATACCAAAGGGGATTTATTTGCCCCAGAGAGATAAAGGGCAGGGAGTAAGGGACAAGAACAGCTGATAGAGGATGAGGAAGAAGGGAACAAGGGAGAAGGGGAAAGGATATTTGCCCTGGAGGGACAAAGGGCTGTCTCTGGACTGAGAGGAGACAGATGTAGCCCATAGGCAAATGGTGGTTTATAAAGGTCCAAGGGGAAAAACCCGTTAGGAAGAGGTGTTTAATTTTAACTGGCCATGTTAATTAGGTGAGCCAAAGAGGGCTTTTGAGTGCTGAATACTTCAATACTTTTATAGCTGGACCTTGTGGTCAGCCTCAGGAAGAGGAAGTAGCCCAGTGAGGGAATAGACCTTTGGAGCTAGCTTTAGGAATGTAACGGTTTTTAGCAACGGAGAAGGAAAGGGGTAAAAGGGCAAAAACCTGTCTTCAGGGTCTGCCATGCTCAGGCCTCTCTGTGTTTGTCCTCCTCTGGCCTGTTAGAGCCCCCTCAGAGACGGTTTAGTGATTAGGAGCACTTGTTGGACCAAGGTATGGTTCCCAGCACTCACAAGGTGGTTGGTTAACAAGCACCTGTTAACTCCAGTTTCAGAGGATATGCCGCCCTCTTCTGGCCTCCATGGGCACTGCATGCAGGTAGTGCATAGCCATGAATGCAGGCAAAACGAACAAACATAAAATGAAAACCAATAAACCTTAAAAACGCAATGCAACTGGCTAGCTTCCAAAAGCCTTTCTGGATGACCAGATAGCACTGTCAGAATGTACTCGTGACTGAAGTTGTGTTTGTGCGGGGTCAGTGACAACTGCTCTGTTCTCCACTCAAGGAATAATTGTCAGGTTTCTCCCAGTTTCGGGAACTTCAGATCAAGCGTTAGCGTGAAGGAAATGCTGATGTCCTTTTCACTTGGCTAGGACATCAGGACGCACGGCTCTGTGTCCCCCACAGGCAGTGTGCCAAGTCACAGGCCTCTGTTTGGGGAAACACAGGACCGTGGAAGACCAAGCATGCAGCCGGCTTCTCTCCCCCTCGGCTGTACTCAGTGCAGTCCGTGGTCAGTGCCACCCACCTGCTGCTACCCATTCTGGCTGCTGATACAAAAGTCCCCCTTGTCAGATTTGACTCTCAGTGTCTACATCTGCTTGCTGGCTGCTAGGGAAAGAGGGGGCAGGCATGGATTCCATCCCTCTCTCTCTACACCCCTACAG
Seq C2 exon
CATGCCCAGGGATGTTCATGTGTAAGACTGGACGGTGCATCCGCAAGGACTTGCGCTGCGATGGCTGGGCTGACTGCCCGGACTACAGTGATGAGCGTCACTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005903:ENSRNOT00000009139:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PD(34.3=80.0),PF0005713=Ldl_recept_a=PU(2.8=2.2)
A:
NA
C2:
PF0005713=Ldl_recept_a=PD(94.4=94.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]