HsaINT0159718 @ hg38
Intron Retention
Gene
ENSG00000149418 | ST14
Description
suppression of tumorigenicity 14 [Source:HGNC Symbol;Acc:HGNC:11344]
Coordinates
chr11:130188869-130189896:+
Coord C1 exon
chr11:130188869-130188939
Coord A exon
chr11:130188940-130189738
Coord C2 exon
chr11:130189739-130189896
Length
799 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
GGCTCCCGCTCTCTCCCCAGCGA
3' ss Score
9.65
Exon sequences
Seq C1 exon
CTGAAGCTGCTGTACAGCGGAGTCCCATTCCTGGGCCCCTACCACAAGGAGTCGGCTGTGACGGCCTTCAG
Seq A exon
GTGGGTGTGGAGAGAAGGCTCAGTGGGATGCACCCCAGACTGGCTGGGAGTAGGATCGGGGTACAGTGTGTGGGGCAGGAAGCGGGAGATGGTGCTGGAGGTCCTGGCCTGGAGAGCCAAGGAGGGTCCTCGCTGTGTCCTCCTGTGCGTTACTTGGCAGCCTGACTCTTCTGCCCCCATGGCAAAGGTGCCTGTAGCTGTTGCTGTGATGAGCTGCCCAAAGGCCTGTGACGTGCTTGGCATGATGCCAGGAACGGCTGTGATTCTTTGTTGTTTTTCCAAATTTGGGTATGGGGGAGTTGGGGTACTCAGGCAGCCTTCAATGAGCCCCCACATTTTCTGTGCTTGAGCAGTTTTTCACGCATACTTTTGTAAAAAAATAGACTTTATTCTCAAAGTGCTTTTTATTTTGCTAGTTCGTTTGAACCCTGGGGAATGCTGTGTGGCAGGTGGCATTCCCAGTTCCTTTCTCAGGTCAGAAAACAGGCTCAGGAAGGTGACACTCGGTGTGTCCTCGCTTGTGGCCAAACTCCAATGGGTTTCCCCTCCTCATTCCTACCCCTGAGCAGCCCCCAGAATCGGTCTGGTTGGGGATGAGACTGTGAGAGCAGAGGGCAAAGGGCAAGGCCTCTTGCTTTGGGGTGGAAAGAGGGATGACACAAGAGGAGCTGGGGAAGGGCCTCTGCAGATGGCAGGCCCAGGTGTGCCCCGAGCCGCCCATGTGTCCTGGAGTCGCTCTGGGCGCACGTGGGGGAAATGGGGCCCAGAGCTCCGCCTCAGGCTCCCGCTCTCTCCCCAG
Seq C2 exon
CGAGGGCAGCGTCATCGCCTACTACTGGTCTGAGTTCAGCATCCCGCAGCACCTGGTGGAGGAGGCCGAGCGCGTCATGGCCGAGGAGCGCGTAGTCATGCTGCCCCCGCGGGCGCGCTCCCTGAAGTCCTTTGTGGTCACCTCAGTGGTGGCTTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000149418:ENST00000278742:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=FE(21.1=100)
A:
NA
C2:
PF0139015=SEA=PD(42.2=85.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACAGCGGAGTCCCATTC
R:
GGAAAGCCACCACTGAGG
Band lengths:
220-1019
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains