MmuINT0153115 @ mm9
Intron Retention
Gene
ENSMUSG00000031995 | St14
Description
suppression of tumorigenicity 14 (colon carcinoma) [Source:MGI Symbol;Acc:MGI:1338881]
Coordinates
chr9:30914302-30915559:-
Coord C1 exon
chr9:30915489-30915559
Coord A exon
chr9:30914460-30915488
Coord C2 exon
chr9:30914302-30914459
Length
1029 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
CCCCCCCCCCCCCCCCCCAGTGA
3' ss Score
10.53
Exon sequences
Seq C1 exon
CTGAAGCTGCTGTACAATGAAGTCCCTGTCCTGGGTCCCTACCACAAGAAGTCGGCTGTAACTGCCTTCAG
Seq A exon
GTGCGTGCTGGAGGTTGGTGTGGTGGCATGGGCTTTGAATGTCTGGGGAGAGGGTCAGTGTGTCTGTCCTTTGTGCAAGTGACTTAGACTGCCTGGCCCTTCTGTCTCCAAGGCAGGGATTGATTAGGTGCCAGCTGGGCAAAGCCCACAAACACCACTTTCAAAGGAGCTGCCCCAGGCACTAAATTCATAAAGACATTGATTTTCCAAATCTGGGTTTGATGGAGTCGGGGTGTCCAGGAAGGCTGCGTGCACACTTCACTTGCTTTCATTTATTTTCTGTGGCACTGAGGGTGGGATCCATCACCTTACCATGTCAGGCAAACTACCAACCAGCCGCATTCCAGTTCCCCTGCCCTCCATATTTGAGACAGGCTTTCACTGTGTTGCCTACACTGGCCTCATACTTGCCAACTTGGGTGATCCTCCTGCCTCAGCCTCCTGAGTGACTGGGGCTATGGGCTTTAGTCACTGTGCCTGGCTCCCAGTGTATACTTGTGTAGTCCTGAGAGCTGGCCATGGGACCTTATTGATGCCAAGCACTGTGCTGCTGAACAAACACCCGCTTCTTCCGCTCTTTTTGGAAACATCACCTCCTCGAGTTGCTCAGGCTGCCCTCAGACTCACAGTCCGCTTGGCTCAGTATCTGGAACTTTGGGTGTGTGCTTTTATTTTGCTTGTTCAGTTGAAGCTTCTGTAATACGGGGTAGTAGGTGGATTCTCACCTCTGTCTCAAATCAGAGCCAGAGTGGTTCTACTGAGGTGCTGTGAGCTCAAGCCTAGTCTAGGCTTCCTCCTCACTCTTAAATTTGAGCTGGCCCCAGGACATGTCTGCAGGGCTAATGTCTCTCAGAGTAGCCTGAGCTGCTGCTGCTGCTGCTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTATGTGTGACTATTGTATAGAGTGTGGGCCTCTGGAGCTCCCTCCCCATCTCCCCGTGTCCCCCCCCCCCCCCCCCCCCAG
Seq C2 exon
TGAGGGCAGTGTCATCGCCTACTACTGGTCAGAGTTCAGCATCCCCCCACACCTGGCAGAAGAGGTTGATCGCGCCATGGCTGTGGAGCGAGTTGTAACATTGCCACCCCGAGCACGGGCACTGAAATCCTTCGTGCTAACATCTGTGGTGGCCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031995-St14:NM_011176:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=FE(21.3=100)
A:
NA
C2:
PF0139015=SEA=PD(41.7=83.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGTACAATGAAGTCCCT
R:
AAGGCCACCACAGATGTTAGC
Band lengths:
222-1251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: