HsaINT0159871 @ hg38
Intron Retention
Gene
ENSG00000136840 | ST6GALNAC4
Description
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4 [Source:HGNC Symbol;Acc:HGNC:17846]
Coordinates
chr9:127909951-127912680:-
Coord C1 exon
chr9:127912268-127912680
Coord A exon
chr9:127910059-127912267
Coord C2 exon
chr9:127909951-127910058
Length
2209 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
3' ss Seq
TGTCCCCCCGCCACCCCCAGGAG
3' ss Score
9.23
Exon sequences
Seq C1 exon
CCGCTGGTCCGCGAGCCCTGCCGCAGCTGTGCCGTGGTGTCCAGCTCCGGCCAAATGCTGGGCTCAGGCCTGGGTGCTGAGATCGACAGTGCCGAGTGCGTGTTCCGCATGAACCAGGCGCCCACCGTGGGCTTTGAGGCGGATGTGGGCCAGCGCAGCACCCTGCGTGTCGTCTCACACACAAGCGTGCCGCTGCTGCTGCGCAACTATTCACACTACTTCCAGAAGGCCCGAGACACGCTCTACATGGTGTGGGGCCAGGGCAGGCACATGGACCGGGTGCTCGGCGGCCGCACCTACCGCACGCTGCTGCAGCTCACCAGGATGTACCCCGGCCTGCAGGTGTACACCTTCACGGAGCGCATGATGGCCTACTGCGACCAGATCTTCCAGGACGAGACGGGCAAGAACCG
Seq A exon
GTGAGCCTGGGGCCTGCCTGCTGGGGTCTCTCTGGCAGCTGGGGCCTTCCTTCTCTGGGAGTCTCTTGTCCATCAGGGGCTGCTCTGTCAGGCCCGGGAGGTCAGCACTCATGGAGGCAGACATGGTCCTGCCCTCTAATGGGGGGCAGGAGGCAGAGGGGATGTCACTCAGGAAACTGTCACACAGATCTAGAATCCCAGATGGTGTTGAGGGCTGTCAGGCCTTTTGAGCACCTGATGGGAAGCACTAGCCAGTGTGTAGGGGCATGAGGGAGCACTTCTCTCTGGAGGGAATGGTCTGTCTAACTTGGTCTCTGATATCCCTTCTGGATAATAAAAGTTAGAGGCCGGGTGCGGTGGCTCACGCCTGTAATCCCAGCATTTTGGGAGGCCAAGGCGGGAGGATCACTTGAGGTCAGGAGTTTGAGGCCAGCCTGGCTGACATGGTGAAACCTTGGGCTCTACCAAAAATACAAAAATTAGGGCTAGGCCCGGTGGCTCACGCCTGTAATCCGAGCACTTTGGGAGGCCAAGGTGGAAGGATCACGAGGTCAAGAGATCAAGACCACCCTGGCCAACATGGTGAAACCCCATCTGTACTAAAAATACAAAAATTAGCCGGGTGTGGTGGCGCATGCCTGTAATTCTAGCTACTCAGGAGAGTAGCTGAGGCAGGAGAATCGTTTGAACCTGGAGGCAGAGGTTGCAGTGAGCCAAGATCGCACCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTCTGTCTCAAAAAGCAAAACAAAACAGAGCAATAACAGCCCTCTTTGCTCACCAGGCATTGGGTGAAGCACTCCGCATTCAAGGTTTCATTTTATGTCATATCCAAAAGCACACTCATGACTCTTGCCAGCCCCTCCTCCACACACCTGCTCTCCACTGGCCTCTGTGCTCAGGAGATAGAACAGTCAGCCTCTGGTGTATCCCCCAGAAAATTGGGCTGTGCCTCTGATTCCTCTCGTATCATCATCTGCCACGTACAATGGCCCATGGCTGCCACCTTGACTTAGGCTTCCCGCCCCCACCACTCCTGGCCTGCCTGCCCTGCGTGATCCTGCCTCTGCCTGCCTCTGTGACTTTGTGTCTCCTTCAGTCTCCCTGTTCTACCCATACTGGCCGTCTGGGGCTCAGACATCCATGCCTATTTCTACCTGCAGGACTTTGCACCTGCTGTTCCCTCTCCCTGGAATGTTCTTCTCCCAGATCTTCCCATGACAGGCTCCTCTTGTTACTCAGGTCACCTCCTCAGGGAAGCCCGCCCTGACCACCCCATCAGAAGGAGTGCCTCCCGCCCTGGCATTCTTTATCCATTCCTTTGTTTCCTTGTCTTGGCAGCAGGTGTCACCCTCTGCCATCATCTTGCTTAGAGATTTGTCTCCTAGCTACTTGTTTATCTATTTTTCTCCTTCCCTTCCCATCTGGTGCTTCCGTGGAATGTTAGCACCAGATGAGGTAGGTTCTGGGCCAGCACAGGGCCTGGGTGGGGCTCAGTTTGAATGAATGAACCAGTTCATACCCGCTCTGTAGAGGTTGAGAGGGGTGGCCCTTGGCTGCAAGAGTACCCAGGGCTGCTGCCTCCAGGGAGCTGAGGCTGGGGCCACCACCTAGCCCCTTGCTCTGAGTGGGGCATGGGGGCATGCGGGCAGGGGCTGGGCTGACAGTGTTCCCTCCCTATAACCCCCTAAAATTATCTCCACTTCACAGACTGGTCATGAGGCTCAGAGAGGTTCACGAGCAAATGTGATGCCCATAGCAGAGCCAGGGTTCAAGTGGAAGATCCTTGGACTCTAGAGAACCCCCACCTGACTTCAAACCACGGTGCCCTGCTGCCTCATGCTGTCTCCCCAGGCCTGGTCCCTTAGATGAGGAGAGGACGTGGCCAGAGCCCCCACACCCATCATCCAGGGGTTTGCTCAAACCCTGCAAAGCGTAGCTGGGCCCGAGCCCCGCTGGGTGCTGAGGAGGTGATCAGGCCTGGGTTTGTGTGCCGCTCTGCCTGTCACCCACTGCTGGCCTTGGGCTGGCTCTGTCCCCTCCCCAGCCTCCCCCAGAGCCCCCCGCAAGAGGTTGAGGTGCATAGCCCCGGGCTGGCAAAGTACCAAGTGCTGCTGGGGCCTGGAGCTACCACATGGCCTCTTGTTGACAGCGTCCCCCTGTCCCCCCGCCACCCCCAG
Seq C2 exon
GAGGCAGTCGGGCTCCTTCCTCAGCACCGGCTGGTTCACCATGATCCTCGCGCTGGAGCTGTGTGAGGAGATCGTGGTCTATGGGATGGTCAGCGACAGCTACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136840:ENST00000335791:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0077713=Glyco_transf_29=PU(59.8=99.2)
A:
NA
C2:
PF0077713=Glyco_transf_29=FE(14.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains