HsaINT0159982 @ hg38
Intron Retention
Gene
ENSG00000010327 | STAB1
Description
stabilin 1 [Source:HGNC Symbol;Acc:HGNC:18628]
Coordinates
chr3:52514365-52514829:+
Coord C1 exon
chr3:52514365-52514496
Coord A exon
chr3:52514497-52514700
Coord C2 exon
chr3:52514701-52514829
Length
204 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGG
5' ss Score
5.63
3' ss Seq
GCCTCCATCCCTCTCCCCAGCCT
3' ss Score
7.59
Exon sequences
Seq C1 exon
GACGCAGACACAGTGCGGCACCATGTGGTCCTGGGGGAGGCCCTCTCCATGGAAACCCTGCGGAAGGGTGGACACCGCAACTCCCTCCTGGGCCCTGCCCACTGGATCGTCTTCTACAACCACAGTGGCCAG
Seq A exon
GTTTGGGGGTCAGGGAGCAAGGAGACCCTAGCCCGGGCCCCTACCCCTGAAGATCCCTTCCCTTTGGAGTTTCCCTAGCTGTGAGCCTCCAACCTCTAACCTCTGCTCCAGGGAGCCCCCCGGCCCTGGAGTACTGCCTGACCTTACAGCCCTGCCAGGTGAGGGTGGTAGGTGGGTGGATTCAGCCTCCATCCCTCTCCCCAG
Seq C2 exon
CCTGAGGTGAACCATGTGCCACTGGAAGGCCCCATGCTGGAGGCCCCTGGCCGCTCGCTGATTGGTCTGTCGGGGGTCCTGACGGTGGGCTCAAGTCGCTGCCTGCATAGCCACGCTGAGGCCCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010327:ENST00000321725:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.116
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(37.7=100)
A:
NA
C2:
PF0246917=Fasciclin=PD(21.9=58.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACACAGTGCGGCACC
R:
GGGCCTCAGCGTGGCTAT
Band lengths:
252-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains