GgaINT0020599 @ galGal4
Intron Retention
Gene
ENSGALG00000001535 | STAB1
Description
stabilin 1 [Source:HGNC Symbol;Acc:HGNC:18628]
Coordinates
chr12:619277-619691:+
Coord C1 exon
chr12:619277-619408
Coord A exon
chr12:619409-619562
Coord C2 exon
chr12:619563-619691
Length
154 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CCTTTCCTTCTCCTTTGCAGAAG
3' ss Score
11.31
Exon sequences
Seq C1 exon
GACAATGAGACAGTGCAGTTCCACATTGTACTGGGAGAGAAACTCTTGCCGTCAGATTTGAGAAGTGGAGTCCATAAGAACAGCATGTTAGGGCTCTCCTACTGGTTAATGTTTTATCAAAACAGCACCCAG
Seq A exon
GTAAGGAGGGAAGACTGTTCTGTCTCTCACGCACCCATATCTGTTTTGGACACTCTTATAGTTCCAGACTGTGTCTATCTGTCTATCAGTCATCAGGCAATCCATGCAAAAGAGTTCAAAGTTATCATCGCAGCCCTTTCCTTCTCCTTTGCAG
Seq C2 exon
AAGTTTGTCAATAATATTCCTTTGGATGGAAAACTCTTTGAGACGAGGAATGGCATACTAATCGGGGTTTCACAGGTCCTCCAGATACAGAAGAATCGTTGCACTGCCAATACCACCACTATACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001535:ENSGALT00000002333:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0246917=Fasciclin=FE(35.8=100)
A:
NA
C2:
PF0246917=Fasciclin=PD(23.3=65.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGACAGTGCAGTTCCACAT
R:
TGGTATTGGCAGTGCAACGAT
Band lengths:
242-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]