HsaINT0160079 @ hg38
Intron Retention
Gene
ENSG00000136011 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr12:103750579-103753353:+
Coord C1 exon
chr12:103750579-103750720
Coord A exon
chr12:103750721-103753219
Coord C2 exon
chr12:103753220-103753353
Length
2499 bp
Sequences
Splice sites
5' ss Seq
AGGGTTAGT
5' ss Score
5.02
3' ss Seq
TCCTCCTCTTCCTCATCCAGATA
3' ss Score
10.15
Exon sequences
Seq C1 exon
GGCAAGCACAAGTGTGAGTGTAAAAGTCACTATGTCGGAGATGGGCTGAACTGTGAGCCGGAGCAGCTGCCCATTGACCGCTGCTTACAGGACAATGGGCAGTGCCATGCAGACGCCAAATGTGTCGACCTCCACTTCCAGG
Seq A exon
GTTAGTGTGACCAGGGCCTATGGCCCAAAGCACCCTCCTCTTCAGGCCTGGGGAAGGGACCCTCAAGGGAAAGAAGAAAAACAAAACAGGCCAAGCCTGGTGGCTCAAGCCTGTAATCCCAATACTTTGGGAGGCCAAGGCAGATGGATCACTTGAGGTCAGGAGTTGGAGACCAGCCCGGCCAACATGGCAAAACCCCATCTCTACTAAAAATACAAAAAATCAGCCGGTTGTGGCAGTGCGCGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGAAAGCGAAAAGCCACATAGAAGTGCAGAGGCATGGGCAATAGGACATCTTGAAACCCAACGGAGGAAGCCAGAAAGGACCCACAAACATAGTTCCTAGCCAAGGCAGAGGGACTTCAGTGGTTCAGAAAGTGACTCAGGGCACTGCACTTTATGGCTAATCAGTATGTACTGGATCTCTCCAGGGTTGGGTTTGTTTGACAGATGTGGTCTCTGGTGGAGACTTCCTGGAGGCTTGAATTGGGCTAGAGGAGCTAGCAAGCCATTTCTGCTGGCCAGGACAGCATGGCCAGGAGAGAATGATCAAGGGTCAGCTGAGAAGGATGAAGCCATGAGGAAGACACATGAAGGCTGTGACCCCCTAGTGGCAGGGTCTGTACTGAGGAGTGAGATGAGGTTGAAAGAACTAACAATGGACACAGAATAGAGAAAAGGAAAGGCTCAGCCATGACATAAAGTTTCCATCCTGAGACCAAATGCAGTGGTGGTGCTGGGTTAAAGCAGCTGGGGAGGGAAGGTGACGAGAGGTTTGAAAGCTTGGTTGGGGATATTCTATGGTCTAGGTACAGGGGCACTTCCAAGCAGAAAGATTTTATGGGCAGTTGCTACTTAGCATGGGGATAAAAATGCACAGCTGGGACCAGCTGATTTGGAAGTTATTTGCCCCTGGGACTGTGAAGTCAAGAAGAGCTTGGCTTTTTCTTTAGGACACAGTTCATTCAGCCTGTCCCACCTGTTCCCAAAGCCCACTTCCAAGTGGAAATCTACCCAGACCATAGAGTGTGGTCCAGCTTCTCCCATGGGCTTTTCTCTTCTGTTTTCTTATGAATGCCAAGAAAATGTTGGCAGTGATACTAAGTGACTGTGCATCACGTTGGACCTCCCTTCTGTTGGAGCTGTGTGGTTACCATTAGCTTGGGAGAATGCCCCAGCTTTCCCTATAGGCACAGTTACAGAACCATCCCACATTCAGGAGGAAGCGCCTGCCCTCACACAGTTCATAGGAGGGCAAACTGCCTTCATGATTTGCAGCCGATTTGGTAATGTGTGCAGCAGACAGCCTTAAAATAACTCATACTGAGACCTGATGGTTCCGTTTCCAGGACCCCATCCTACAGAAATAATCTGAGAATTGAAAAAAGATAAGCATACCCATCCCACCATTATTTAACATCACAGAAAATTAGAAATAACATATATATCTAATAGTAAATGATGATAAAATATATTGATATACATCTACTCAAATTCATTGTAAGGTATTTTGTTGTCTCAATAAAGAGACAAGGAACACTTTTCCATACTTCTCCAAGCTGTTAAATTGGTGTTTGCATTTCAGATATGGCCAAGATCATTTGACTTACGCACTGTGCTACTGAAATATGTTCAAACGAGAAAAACTTAGTCTTCTTTGGTGTAGAAAGTATCATTTTTGTGGCATTATACAATGAACTTGACAATATAAAAATGTGACTTGCTTCTTGAACTATTGCTGGTGTCTGCACTGAATTGTTTGGTTAGGAAAGGTATCAGCTATGAACCAATGATAAAAATCTTCCAGTATCTTAGGGGGAAATGAATTTTTAAAACTTTTTTAAAAAGCACAGCAGGGGTCAGAAAACACACAGCCCTGGGCAGAAACTCACTTTAATGTGTTTTTTATAGCTGTAAAGGTCACAACAAATTTTTCAATTATAAATATGGGGAGGAGGAGAAAATCATGTTACCAGAGAAATTTTATAATTTTGGGATATAATTATGATTTAATGTTGTTTTAAAAAGATTTATGAAAACTACATCGGCAGTATGCTACCACATTTAGAGTATATATAACATGAATAAATAGGAAAGAAGATTGAAAGAATGTCAAATTATATCAAATTAAAAATTTACCAAAAAATAAAGTAAAATTCTAGAAGGAAATGCACCAAAATGTTAGCCATGGAGTAATGATTATTTCTGGAGAATAGAATTGTAGGTGGTTTTTGCTTATGTTTTTACTTTTCTGTATTGCCCTAATTTCTACAATGAACATATGCTAGTTTTATAGTTAGAAAAGAAATATTTTAAATGATGTACTTCAACATAACTTGAAGGGAAAGTGGCTTCTGGAGACACCCTGGGGTATAGCTGGCCTTCATTTTGAAAGTCCTTCAGAGTCCATTGTTGGAAACACTGCCAACCTGGTGGGCTGACCTGGGCGATTCCTCCTCTTCCTCATCCAG
Seq C2 exon
ATACCACTGTTGGGGTGTTCCATCTACGCTCCCCACTGGGCCAGTATAAGCTGACCTTTGACAAAGCCAGAGAGGCCTGTGCCAACGAAGCTGCGACCATGGCAACCTACAACCAGCTCTCCTATGCCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136011:ENST00000388887:60
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(44.7=35.4)
A:
NA
C2:
PF0019312=Xlink=PU(43.6=91.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains