MmuINT0153445 @ mm9
Intron Retention
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86316290-86317986:-
Coord C1 exon
chr10:86317845-86317986
Coord A exon
chr10:86316424-86317844
Coord C2 exon
chr10:86316290-86316423
Length
1421 bp
Sequences
Splice sites
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
3' ss Seq
TAATCTCTCTCCTCTTCTAGACA
3' ss Score
9.39
Exon sequences
Seq C1 exon
GGCAAGCAGAAGTGTGAATGTAAAAGTCACTATGTCGGGGATGGACGGGACTGTGAGCCCGAACAGCTGCCCCTTGACCGCTGCTTACAGGACAACGGACAATGCCACCCAGATGCCAACTGTGTGGACCTTCATTTCCAGG
Seq A exon
GTCAGTGCGGCTGAGACCTTGGCCCAAAGCACCTGTCTCTTCAGGCTTGTGTGCAGGAGAGAAAAGAAAGATGAAACAAAAACTAAAGAACCCACACATTATCCAGGCTCAGTGAGGCAGGAGAATCACCTCACAAAGGACCTTGAAGGCTAGAACTAGCGGGCCCAAAGGACTTTCTCAGGGTTTCCCTTTCCCATGTTGCTAACAACCTCACAACCATGGACTGGAATTGAGTCTGGAAAGTGCAGGTTAGTGTGGTTGATAACAAAGAGGCTGTCACTCGCGGCAGCAGTTTCTTACCAGCTCTTTGCTCCTCACACAGTGCCTGGCATATACCACAGGCCCTTCTGAGGATGATTTGAATGGCATATAATAAATTCACAGGCCTATACAACTCACAAGAAATTAAAAGCCACAATACGGAGGGCAGGGGGGACGTGCAGGTACAACATGTTGAAACTCCATAGAGAGAAATCACAGAGCCCATGGAGTTCAGAGCCAGAGTGGAGAGGGCCTTCAGTGGTCTCATCTCATATATAAGGGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATAGAGAGAGAGAGATCTCACAATGAATCTTCCTTTAAAAACAGAGGAGGTGGGCATGATACTAATCTGCTGATACTGATGCCTTTAATCACAACACTCAGGAGGCAGAGGTAGTTAGATTTCTGTGAGTTTGAGTCAGTCTGGTCTATATAAAAAATTCCAGGCCAGACAGGACTACATAATGAGACCCTGTCTCAAAAATAAATAAATAAATAAATAAAATTAAAAAACAAAAACATATATATATATATATAAAAGCTACCCTTTTTTTCAGATAGGGAAGGAAAATCTATCTAGATGAGACTTTTCCAGAGATATGCAGTAGAGGCCTGAGACTCCAGCAGAAACCCAACAAATGCCTGGATTGAGTCAAACCAGAGAACATGGGGGAGACATTTGTACCTGAAGAAAGAATAGACAGCAGGAAGATTGTAGCTGGTTAGGGGAGATGGCTGCATAGTCACCACGGCTCCACATGTGCCCAGGGCTTACAGAGGCCAGAAGAGGGTGTTGGGTCCCCTGGAACAGTTGTACGCTGCTGTCTGGCACTGCTCTAAAAGAGTAGCCAGTGCTCTTAACTCCTAAGCCATCTCTCCAGCCCTGTTTCTATAATTAATAGAAATAAATACTTCAAGTGATGAGCTACAACTTGAAGGGCAAGTGGTTTCTTTCCCAGGGTACTCTGGGCTACAGTTGGGAAAAGTGGCTTCCCAGGATACCCTGGGCTACAGTTGGCCTGTACCTTAGAAGCCCTTCTATGTCTTGCTTCAATCCCTGGCAGTCAAGCCAGCTGACTTCATAATCTCTCTCCTCTTCTAG
Seq C2 exon
ACACTACTGTTGGCGTATTCCACCTACGCTCCCCACTGGGCCAGTACAAACTGACATTTGACAAAGCCAAAGAGGCCTGTGCCAAGGAAGCTGCATCCATAGCCACCTACAACCAGCTCTCCTATGCCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-Stab2:NM_138673:60
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(44.7=35.4)
A:
NA
C2:
PF0019312=Xlink=PU(44.1=91.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAGCAGAAGTGTGAATGT
R:
TTCTGGGCATAGGAGAGCTGG
Band lengths:
275-1696
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: