RnoINT0144389 @ rn6
Intron Retention
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27380886-27382717:-
Coord C1 exon
chr7:27382604-27382717
Coord A exon
chr7:27380906-27382603
Coord C2 exon
chr7:27380886-27380905
Length
1698 bp
Sequences
Splice sites
5' ss Seq
AGGGTCAGG
5' ss Score
2.6
3' ss Seq
AATGTTCTTCCTCTCCTTAGACA
3' ss Score
9.92
Exon sequences
Seq C1 exon
GGGGACGGCAGTGGACTGGTGAGCCTGAGCAGCTGCCGCTCGACGTTGCTTACAGCGACAACGAGACAGTGGCCACGCCAGATTGCCAGGCTGTGCAGACCCTTCACTTCCAGG
Seq A exon
GTCAGGTGTGGCTGCCACCCGAGGGTAGAGTGGCCCAATCCTTCGGGCTTGTGTAGCAGGGAGAAAAGGAAGATAAAACAAAATGAACAGAAACTAAAGAACCCACACATATTATCCAGGACCCAGTGAGCACAGGAGGATCGACCTCACCAGTGGACCTCGAAGGATCACCTAGTGGGAGCTAAAGGACCTTCTCGGAGTTTCCCTTTCCACGAGCATTTGCTGGAATTGAATCTGGAAAGGGCAGATTGGTGGGTTAATCAGCAAAGACGGGCTGTCACTGACCAGTAGCAGTTTCTTTTATTTTTTTTTCTTTTTTCTTTTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCACTTAGGTAGGCAAACGCTCTAGCACTGAGCTAAACCCCCAAACCCAGTAGCAGTCTACTTAACAGCATCTTGCTCCCTCACACAGTGACTGTGGCACGTGCCCCAGGGCACTTTAAGGGATGACCTCGAATTAGTACATAATTCCAATTCACAGGCTAATACAACCTCTCACAAGAAAGAAAAGCCACAGTATGGGAGGCCTAGTGGCACAGCATGGCCGAGGGACCCCATAGAGAAAAATCACAAAGAGCCCACAGAGTTCACAAAGAACCAGAGTTAGAGGGATTCAGTGGTTTCAACATATGGGTTTCAGACTAGATAGGACTAGGGTAGATAGATAGATAGATTAGATAGATAGATAGATGATAGATAGATTAGATCTTAGGTAGGATATACATGTTGATACTAAATCATAATGAATTTTCTTTTATAAAAACAGAGAGGGGGTGAGCATAATAGTACACGCTTTAATCACCTCAAGGAGGGCACGAGGAGTCGATTTCTGCGAGTTTGAGTCATGTCAGTGGCTCTACATAGAAATTTTCAGGCCAGACAGATACAATAAATGAGACCCTGTCTCAACAAAACAAACCAAACAAACAAACAAAAGCAGAGGCATAGATAAATAAAAGCTTTTTTTCTTCAGAGTAGAGAAGGGAACATCTACGGGTAGGTGAGTTAGAAATTTTTCCAGAGGACATTGCCAGTAGAGGCCTGGGACTCCAGCGGAGGGACCCAGCAACATGCCTGATTGGGTCGGGAACCAGAGAACATCGGGGGGGGGTCTCATTATGTAGTCCTGGTTGGGGGTGGCCTGGCAGCATAGATTTGTTCTCATGTGAAGGCACACTGATCGAAACTCGCTGGAAGTATGGGTCGACATAGCACGCGGGTTGTCGCTCTTGCTGAGTAGGGTGTTAGAGAAAGGTCGGCGTGCCTTGGCTCCGGCATGCCTAGGCCTGCTGAGGCCAGAAGAATTTAGGTGAGTTTTTAGGATGTTCTACATGGCACCCCTACGCTCGTGTTGTTGCTGTGTGGTTCAAACGCTCTGAAAGAAAAATTAATTGTGACCAGAGCTATGATAGCTTCCTTAGTCAGCATGCTCATCTACGCTACTCTGCTTTCATACTAATTAATATCAGGTATATAAATCTATTCAATCATAATGTGCACGTGACTTCCCACGTAACTGAAAGAAGTGGCTTCTCTGGATACTCAATGGGTCCACGTTGGGTGTAGTACCTCAGATATCCTAGTCCTTCTAACTCTTTTGCTTCACATCCCCTGCCAGGTCATTTGGTGGCTGACGTTCATAATGTTCTTCCTCTCCTTAG
Seq C2 exon
ACACGACCGTAGGAGTATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948:ENSRNOT00000059538:67
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(15.8=15.4)
A:
NA
C2:
PF0019312=Xlink=PU(3.3=42.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]