HsaINT0160252 @ hg19
Intron Retention
Gene
ENSG00000136738 | STAM
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:HGNC Symbol;Acc:11357]
Coordinates
chr10:17730026-17735311:+
Coord C1 exon
chr10:17730026-17730172
Coord A exon
chr10:17730173-17735220
Coord C2 exon
chr10:17735221-17735311
Length
5048 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
GTGTTCCTCTTTTTTGTTAGGCT
3' ss Score
8.09
Exon sequences
Seq C1 exon
GGTCATCCTAAAGTATGTGAAAAATTAAAGGCTCTTATGGTTGAATGGACAGATGAATTTAAGAATGATCCACAGCTTAGTCTAATATCAGCAATGATTAAGAACCTTAAGGAACAAGGAGTTACGTTCCCAGCTATTGGCTCTCAG
Seq A exon
GTATTTTGGGAATGAAGTTGTGTGTGTGCTACAGTTTGTTTCTCTTAAATAGCTATATTTATTTGAATTTTTTTCTTCATTCCCAGGTAATTTTTACTACTTCAGAGGAATTTTCGTTAGCTAATTGTGTTAGTAACTAGTTGTATTGCTAGTTAGTAATACTAGTTTTCTGGCATTCAGAGGTGCCAGAAAAGTATTATAATGGAATATTAATGTGCTCTAACCTCTCTACTTCTTTATAAACGAATTGGTTTAACATTTTGCAGTTTTTGAAATTTTTTGGTATAGTTTTTGTTTGTTTGTTTTTGAGACGGAGTCTTTGTTTGTCGCCCTGGGTAGAGTGCAGTAGCGTGATCTCGGCTCACTGCCACCTCTGCCTCCTGGGTTCAGGTGATTCTCCTGCCGCAGCCTCCTGAGTAGCTGGGACTACATGCACGTGCAGCCAGACCTGGAAATTTTTTTTTTTTTTAAATAGAGGTGGGTTTCACCATGTTGGCCAGGCTGGTTTCGAACTCCTGACCTCAGGTGTTCTGCCCGCCTCGGCCTCCCAAAGTGCTAGGATTACAGGTGTGAGCCACCAGGCCCAGCCAGTACAGTTTTAATAATATACACAAAATAGCTTTATTAATTAGGTAACACTGTCTTTTTAAATGCTCTTAATGCTATAATTTTCTACAAAGAATGATAGCTCAGAAATCAGGATATCCTTAAAAGTTAGGGATGACTTGAGAGATTCTTTTGTGGAGGAAATTTATGAATTCCTCTATTAACAATGAGAGGACTTTAGAAGGGGTAAATGGGAAGAGAAGCACCTGAAGCATTTTCTCCTTAGTAAGAGCCGACCAGTACATAAGTCTTCCTTTCCCCAGTGGATATGGCTAAATAGCTTAACTTTGCTCTCCTGTCCACCCTTGTGCCAAAAAAATTCAGTCTCTAATTTATGTCATGTAGAAAAAAATCAAGAAATGTCTTTTTTATTCCTATTTCTATTTTGGGTAACCTTCCTTTAGGATGCCCAACTAATCAAGAGGCTTAAAATATGTGCTGATTTACTACACTGTCTTTCCCCAGTTTATTGACTGGGACAGACTGTAATGAGTGATGTGAAACCATGAACAGAAATCTGTGAGTGTGGAGGGGCTTATGTTTTGACCACTTCAGGGAGTCATGTAGCTTATCTACATTCATCCAGACCTACATGTGCTTTCTTCCCAAGGCATTTCCAGTTTATCTGAGCACTCTTGAGATGTGAAGACTCAAAAATGTATCTGGGAGAGGAAGGAAGCAAAGGACATTCTTCTTCTTAAAAAAATTTTGGTTTAAAATTTTCTTAAAAAAATTATGTCTTTGAAAATTCATTCATTCATAACTGATAGCTGGTTTTTACTACTCAGTATAGTTTCTAGAATCTGTATAATTAAGGAAAAATCTTAAACAGAATAATCCAAGACATTATACATTCCTTGACAACAGAAACAATGTTTATTTATCAAAGAGTAGACTCACTGCAGAGAACCCACCTAGAATAGGTAGAGAAAATGCAAGCCCACTAAATATCTAGAGTCTTTGGTTCTTGTTAACTCAAAACTTGGTTTGACCAGCATCACTGGCATTACCTGGAGGCTTGTTAGAAATGCAGCATGGTTGAACCCACTCCAGACCTATGGGTTCATTATCTCCATTTTAACAAGATCTTCAGAGGATTTATATGCACGTTGAGGTCTGAGAAGCACTGCTGCTCTAGAGGACAGCCTTCAGTGCAAGTGAAAACTGCGTTTCAGTCCACAAAGGGACTTACTCTTGTAAGAAAAGGAAGAATTAATGATTGTGCCATATGTACCCTTGTTTGGTTAATCTAGAATCTTAGCCACGGAAACAGTTTTAGGGAGCCTCTAATCTAATCCGCTCATTTTTACAGATGAGGAAACTGAGACTCAGAATGGTTAAGTGACTTGCCCAGGGACACAGCTCATAGTTGACAGCTGGAACTAGAACACAGGCATGCTGATTCTCAGTCCAGTGTTCTTTTCGCTGCCCGAGTCTGCCTTCTTTGTTAGAGAGGTTAGTGAATATGTGTCTGTCTAGACCAGGCTTCCAGTGGAGTGAATGCTGGCAAGAGCATTATGTCTTGATTGGTAGAGAAACTAGCTTATTCTCTTGTTCAAGAAATTCAGGACATAGAAGAGCAATAGTAAAGATAGGACTTAATTTTCATCCTTTGATCTAGATGTTATAAAGTATGTAACAGCTAATCTTGTCATAGTGGCTATATTTCACCTACAAGAAATACATATAAAGTAAAATATGATGAGGTAGAATGATTTTTTTAGTGGTTTCTGAAAAGCTTATTAGAAACCCTACATGTAAAGAGCTTCACATTAAATGAAAAAAATAAATCATCTAAGTTCAACTGCAGAACTCCCTGTAGATTTTAAAGCCACTTAGTTACTTAAGTTATTACTGTGTTTTCATCAGACTAGATTTTTGTTAGGGCATACTTAACAAAAACCTCTGAAGATATATTTTTCTAAGTATATTTTTTTCATCTGAGTACAGAAGAAAATAATGTAAAAATATTAAGAAAAGTGATAAAGTCACCTGACTCATACTGATGCAGTTCTGTTAGCACTAACTTTTGATGTAAAGATAGAAGTAGGCTAGCAGCACCGCTACCGTAGTTGGCTGCTTAATAAGACAAGTGTTATTGTTACATTTAGAACCTGATGATAGAAAGGAACTTTGAATAAAAAGTGCAGTTCAGAAACATGCGGCTTCACATAGCTTATTTCTGCGCTTCTCTACTGGTAGAGATTTCTTCACACACCATAAAAGTTCAAATCTGTCTAATTGTGAAGTTTGCCAAATTGTGAACAAAAATTTATGTAAACCGTAAAACTTATTTCTGACCAGGCATACCTGTAGTTTTCAGAAGTGTCTGATAATTAAAACATTATCTAAAGAAAATTGCAACTAGAGATAGGTCAGAATTGAGAGTGTTTAAAGTTGTATTCTGTGAACACCAAAAAGTTTTTTTCTTCTCAGCTCTTCTAAAAATAAATGCCTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCGAGGCGGGTGGGTCACGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAAACCTGTCTCTACTAAAAATACAAAAAATTAGCCAGGCGTAGTGGCAGGTGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGTGTGAACCCGGGAGGCGGAGCTTGCAGTGAGCCAAGATCTCGCCACTGTACTCCAGCCTGGGCGACAGAGCGAGACTCAAATAAATAAATAAATAAATAAATGCCTGTGCATTTGTTTGACAACACGAAATCCAGTTAAGTGAGGAATGTAGAACTGTATTTTATTATAATGTTGAATATTTTTCCTTTCATACCCTCAACAAACATTGATTGATTGCTTGTAATATTTAGGCACATTCCCTCAGGGAACATACAGTCTGGTTGTGGAGACAGACATGTAATCAGACAATTATAACAGAAGCTGAGATTATTGCCTGTTACAATGTTCCAGTCAGTGTTCTAAGTGCTGTACATGTGGCAATTTGAATGTGTTTTAGAATTTCATTTTTAAATTGTTTGCCCTGGGAATGACAATATACATTCATAACTTTTCATGATCTACTTTGAGTTAATATTTGATGTAAAATATAGCAACTTTGCATCTGTAGAGGTCTGTTTACACTGTAGTTGTCATGTGTATTACCTCTACATACGTTATAAGCCCCGGAGGTAATGTTACATACTTTTTGTTTTAAACCCTGAATGAGCCCATCTCATCTGATTTTGGAATCACATGTGTTAATTTAATACTTTAAATAGGCTGTGAGGTGCCCATGAGGTGTAGGTGCTATTATCGTAGTCATTTTATTGATGAGGAATTTGAGGCACCAAGAGGCTAATTTGCCCAGTGTCATCCAGCTAGAAAGTGGTAGATCTGGGATTTGAACTCATGTCTGTCTGACTCCACAACTTACATTCTTAACCACTCATATCGCAGTACCTTGTTTAAAGGTGTTATCATAATAACAAACAAGAGAATGTGTAATTAACAGGTTGAGGGATGCTTCATTGACAGTGATATTTTAGCTGATTACTGACTGATGTGTTCAAACTCAAAAGGGAAAAAGTGAACGGAGCAAAGGAGCCATAGGGGGAGAACGTTGTAAGTAGAAGTAAATGAGTGTGAGACCTGTAAAGTACCGGTATAGAGACTGCTCAGGAACTGCTAGCAGTTTCTGGTAACTGGCAGAATGGTTGGAAATGAGGTTGGTAAGATAGGCTAAATTCTGATTTGCCTTGAATGCTATGCAAAAACTGAGAGGCCACAGAGCCCATAGGCTTAGAAGCTTGTAATTCCAGAAGTGTGAATTGAATTATATGTTTGTTGTGTATTCCCTTATTTACACAATTTAATAGAGGCAGTGATATACTGTCAGAATTAACTACTTGTAATTTGGTTTACAAAATAGGATTTTTGAGCATTTATATCGTTTTATATATATATCTGAGTTCCTGAAGATAACATCCTGACACTTGATCCAAAAGGAAATGATAACTCTAACTATTAATAGATACTACAGTTTTTTTTTTAACTATTTATGTTTAAAGTAGTCATCTCTTTCTGTCTCCCAGCCTCTTTTCTGGTTTTGGAGTTTTTTTAAACACGTTGAAATCTTCTCTAGTCTGTCTTCTCTGACTTGTGTACCATATGCTTTTAGTTGAACCTCTTCACACAAACCTGGGAGGGTGTGCCTAGGCTGCCTCCTCTAAGTGTCTAGTTGCTCTCTGTGTTCTCCAATTCTGATTCATTTCCCTCTCCCTTTTAAGGTGGAAGCTGCTGCAGTTTGGATTTCTTCTTTCAGAAATCTGTGCTAGATTGATGAGAAAGGTTTTGCAAATTCTTAGGGTGGGTGAGAGGAGGAGAATTTGATAACAACCCTCAAATACTGTGTTCCTCTTTTTTGTTAG
Seq C2 exon
GCTGCAGAACAAGCAAAAGCAAGCCCAGCTCTTGTAGCCAAGGATCCTGGTACTGTGGCTAACAAAAAAGAAGAAGAAGATTTAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136738-STAM:NM_003473:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.587
Domain overlap (PFAM):
C1:
PF0079014=VHS=PD(28.9=79.6)
A:
NA
C2:
PF0280915=UIM=PU(50.0=29.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)