RnoINT0144530 @ rn6
Intron Retention
Gene
ENSRNOG00000060817 | Stam
Description
signal transducing adaptor molecule [Source:RGD Symbol;Acc:1564499]
Coordinates
chr17:81235292-81238368:+
Coord C1 exon
chr17:81235292-81235438
Coord A exon
chr17:81235439-81238277
Coord C2 exon
chr17:81238278-81238368
Length
2839 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
CCCTTTTCTGTGTTTGTTAGGCT
3' ss Score
9.05
Exon sequences
Seq C1 exon
GGCCATCCTAAAGTATGTGAAAAATTAAAGGCTCTTATGGTTGAATGGACAGATGAATTTAAGAATGACCCACAGCTAAGTCTGATATCGGCAATGATTAAGAACCTCAAGGAACAGGGTGTAACATTCCCAGCCATCGGCTCTCAG
Seq A exon
GTATTTGTGAAGTTATGTATGTTACAGTTTAATTTTTCTTCTAAAGTAGCTATGTCTGTTGATGTTTTTCTCATTTATAGTTAGCTTTTAGTGCTATAGTGTGGTTTGCTGATAACATTTTATTTAGAGACCCCTCCCTGTACCCCCCCCAACAAGCTGAAGTAGAAGACTAGTGTGCCTTTCCCACCACCTCCTCTCCTTCAGAAAGCAATGGCTTCAATGTCTTACAGTTTAACTTCTTTATCCAGTTTGACTCTGACAAAATGGCATTGGCTCAGATAGCAATGGACAATCTCGTTAATGCTTTTAATGCTAGTACTTATCTACAAAGAACGATAGCTTAAAAATCTGTGTGTCTTTTTATTGAGAAATGTATGAGTGCCTTTATTTAAAATGAGGAAATATGGGAGTAGTCAGTGGGAAAAAAAGCAAATGAAATAAATGACCTGTTCGTTTGTTTGTTTGTTTGTTATGAAGAGCTAAGTAGACCCTGAGTCTTCTGCTTTCTAAAAAGTCTGACTGCTGCGGGGTTAACTTTCCTCTCACACACACCACTGTGTCTGTTATGCAGTGGATTTCTGGTTTGTGTCATATAGGAAAAAAAATCAGCGGGCATCTTTTACAGTCTTTTCTATTCTGTAGCCATCCTTAGGGGCGTTTAACCAACGTGGGCTGACTAAAGCGCAGAGTAGTGTGTTCTCATTTCCTGCTTTTGGATTGGACAAGCTCTAGCAAATTATATGAGAATATGAACAAACCAGCCTTTCCATGAAGAGCATACCTTCTGACTGTTGACTGCTTTAAGCAGTTATATTAAATCATATACAATTGTCTAGACTTTTCTCCAGGCCAATTTGAGTGTTCTTTAGATGTGAAGGCCTAGAAATATAAATATAAATATAAATATATATATGTACATATATATACATATGAGAAAGGAAGTGTGTGAATTATTTTCTTTTTGCTTTAAAAAATCGGTTTTTAAACTAAGTCTATGGTAATACATCTTAGTATTCATTCATAATTAATAGCCAGATTTTATTAGTAATTTTGAAAATTTAAAACTAATGTTTGATTTTATGCAGAACAATCACAGCTGCTATAAATTTTTGGCACGAGAGAGAAGCAATGTCTATCACAGAGTGAATGCACTGGAGGGACATACAGAACAGACTTAGAATTGCATTTTCTGTACTTGTTCTAGAAGTTGTTACTCAGACTGTGATCCATTGACCATTATCATCAGGATCACTGGAAGTATTATCAGGACTGCAGCCTCTGAGGTGCCATGACTCCTGTGGACTCATTGTCTCCGTTACTAAGACGGTTTCCCGTGTGCACAAAGCACTGAGATCTCTGCTCTGGAGCCCAGCCTAGTGCGAGTGTAAACAACTCAGTGTAGATGGGATTGCCCTTGTGAGAGAAGGAGACCTAGGGATGTGTTTGACATGGAGCCTCCACCATTATGTAGATTCTTAGATAGTTATGGGAGCAGCTTCAGGGCTTCCTAATGCAGTCCCTTCGTTTTGCATGTGAAGAACTGATTTTGAGAGTCGCCAGAAGAAGGACACCACAGACTGGATAATTCAGTCCAGAGATTTTACACCACCTACTCTTGTTTTCTGAGAGCATCGACTGGATGCACTTGTGCTTAGAAGTTACCCCAAATGTAGAAAAGCCTCAGTGGTATCCTTCTGCTTTGAACCCAGAATGACCCTCTTCTCATCTGGCTTTAGAAGCTGTACATGCAAGCCCAGGCCCCTGAGCATGTTGTATGAAGAGTGTTGTATGGCTAGGGACACCTGATAGCATATGGCTAGTATGGGACATGTGGAATTTGAATCCACATTTGCCTTGATCCTTAACTTGTAATTTTAGTCACCCATCTTATACTACCTTGTTCAAATTGTTGTTTAGGTACCAGAGGTTAACAAGGGTGCTTAACAGGGGGCTTGAGCAAGTGATTTCTTAGCTACTGACTGACTGGTTGTTGGGACTCAGTAGGGATCAGTGACAACAGAGTGATAGAGCGTAATGAACCAAGGGAGCTCTCTGACTAGAAGCACATGCAGGCCCTAGGTGTACTAGCTGTAGTGTGCATTCTGCTCAGCAGCCACTGTCAGCTTCTGGGGACTGGAGACTGAACCAGAGGTTAGCAAGATAGGCCACATTCTGATCTGTGATGATGGTATGCAAATTCCACAAGGCCATGAAGGCCATGAGCTTTACAAGCTTCCGATTTCACACCTGTGACTTCGCCCACGTTTTTATCTGCACATTGTTTTGTTTACAATATAATTAATGGTAAGCATTAGCACACTGCCAGAGGAGCGTGTATTTTCATTAATAAAATGTGATTCTAAGACTAACTATGTTGTTATTTATAAATATTAGCACATAGAGATTACTTTCTGCCTTTTCACCTGAAAGAAATAGTAAAGTACAACTATTAAATTTGTATTAAAAATTTCCAAAGCTGTTTTTAAAATAGTTCTCAGATTTCCTCTCACAACTCCTCTTTTGGTTCTAGAATTTTTTTAAAATTATAAATACTATTTTTGTTTTCATTTTTTTCTGTCTTACGTACGTATCTTTAGTTTATTGTCTTTGTACTGATCTGGAGAGTGCAGGTGGCCTACCCACCTGTCCAGTAGACTTTACTTTTCATTTCTGACGTTCCTTCCTCTTTCCAATGGAAAGTCTTTCCGATTGGATGTCTTTTCTTCTTGAGAAATCTGTAGCAGAGGAACGAGAGGGTTCTTGGGAGATTTTTGCTTTGATGGACATGTAAGACGGTTTGAGAATGACGCCCGCCCACGCCCTTTTCTGTGTTTGTTAG
Seq C2 exon
GCTGCAGAACAAGCGAAAGCAAGCCCGGCTCTGGTAGCCAAGGACCCTGGCACTGTGGCTACCAAAAAGGAAGAAGAAGATTTAGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060817:ENSRNOT00000077368:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.581
Domain overlap (PFAM):
C1:
PF0079014=VHS=PD(28.9=79.6)
A:
NA
C2:
PF0280915=UIM=PU(50.0=29.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]