HsaINT0160265 @ hg38
Intron Retention
Gene
ENSG00000115145 | STAM2
Description
signal transducing adaptor molecule 2 [Source:HGNC Symbol;Acc:HGNC:11358]
Coordinates
chr2:152144888-152147308:-
Coord C1 exon
chr2:152147162-152147308
Coord A exon
chr2:152144958-152147161
Coord C2 exon
chr2:152144888-152144957
Length
2204 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTTTACTCATACATTTACAGACT
3' ss Score
7.55
Exon sequences
Seq C1 exon
GCACATCCTAAAGTATGTGAAAAACTGAAATCTTTAATGGTGGAGTGGTCAGAAGAATTTCAGAAGGACCCTCAGTTTAGTCTGATATCTGCAACTATTAAATCTATGAAAGAAGAAGGAATTACTTTTCCTCCAGCAGGTTCTCAG
Seq A exon
GTGAGAGATTTATTCAGACCCATGGTTGACCCTATAATATTTTGAAGGTATGTATGTTATGTAAAGACTAGGCAAGGTATGTCTAGATTATCATTTTCCACCTTTACTTCCCAAATGACTCTCTAGCATAGTGCCTTCCTTACGTTTAGTAGACATTCTAGTTTTTATGTGTATTTCTTCCACATATCAGAACCTTGTGAAGTTAATCAGACATAGTGTATTTAATGTTCCTCTAAGTCTACAGTCATGCAAAAGGCATAGGTATATGACATACCCCTTATATTCAAGAAATTTGTAGCAAATTTGAATGATAGCTTTATACATGTGAAAAATAACTAATTTAGATTGTAAGTGACAAATACAGGATGAGGGGAATAGACTGCATACTGTCTATCTTAATACCAAAGAGAGAAAGAGGTGACTACAGATTGGAATGGTGAAGAAGGTAAAGAGGTAGAATTTTGAGACTTGAATGTATTAATATTTTGTTAGAGAGAAGTGAAGAAGTCATATCAGGAGGTAAGTGAAATGAACAAATTCATGGAATTGAGAGGCTCAAGACTTGTTTGTTCAAGAGTGAATATGCCTAGAGTGAATGCTTCACATACAAGATGGATGGAAATGTAAGACTAGAAATTTATTTGCTGGGAGAAGGGATAGCTTTAGTAGAACTGGGGTGTGGAGGCAGGGATGTTGACTCATGGAGTGGGCTGGTTTTTTTAGGTCTAGGGGAGAAAAATACTATTCCTTGGGTTTTGCTCTCAGTACCTTATTCCTTCCCATTAATATTAAGATATGGGCTAGGGAAAGAGACGATGAGAAGTACTATATTTTCTTTTATTTTAAATCATAGATTAAAGAGAAAAAAAGATTTTTTTTTTTTTTTTTTTGAGATGGAGTTTTGCTCTTGTTGCCCAGGCTGGAGTGCAGTGGCACAACCTCAGCTCACTGCAATCTCTGTCTCCCGGGTTTAAGCAATTCTCCTGCCTCCGCCTTTAGAGTAGCTGGGATTGCAGGTGCCTACCACCATGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGACCAGGCTGGTCTCAAACTTCTGACCTCAGGTGATCCACCTGCCTCGACCTCTCAAAGTGCTGGGATTACAGGCATGAGCCACCACGCTGGCCGAAAAAAGATTCTTTATAGCTGACCAGACCTAAGGGTACAAGGTAACGTTTTGAGATAAGAGTCTTATAAGTAATAAAAAGGAAACATTTTCCTGTTCTGTCCTTTCTGCATATTTTTCTGAAAAATCTATGTAAAGAACCGGTTGATGGATCAGTCCTGGATACCTGTCTTACATGCTGTTTATTAAATTCAAGCATGACCTTCCTTACTTCTCTGCTATGTCTGGCAGACCACTGCCACCCAGCCACAATAACTAGTAAAAGGACTTCACACATATTCCTAGAACTGCACCTCTTGTCTCTGTCCCCATTCCTCTCTCTTCAGTGATGATCATGACTTCTTGCTGGCACTCCTCGTGTAGCTGTACTCCTATAGCAGAGCTCCTCTCACTAAGAGACCTTGGACAATTGAGATCGGGAATACAATCAGAAAAGAGTCTTTTTTAAATTCTATTAATATTTAAGTACTTTCTGTATGCCAAGTTCTGTGTTACATTTATGCAAAATCTAAGCCAGTTTGATCCCTGTGTGAGTTTATAATGTTTTCTTGAAAAATCTGATGTTTTATTTTAGTATTTGAAAACAATTATTTAAAATTATTATAAAGAACTTCACTTTTAGACCAGTGATGGTGGCTCATGCCTGTAATCTTAGCACTTTGGTAGGCTGAGACAGGAGAATCACTTGAGGCTAAGAGTTGCAGATCAGCCCAGGAAACATAGTGAGACCCTGTCTCTACAAAAAATAAAAATTAGCCGGTTGTGGATGCATACACCTCTAGTTCCGGCTTCCCAGGAGGCTGAGGCAAGAGGATCACTTGAGCCCAGGAGTTGGAGGTTACAGTGAGCTATGACTGTGCCATGCACTGCAACCTGGCTGACAGAATGAGACCCTGTCTCAAAAAAGAACTTCACTTTTAAATGAAACTCAGTTATATCAGTATTTTTTAAAATTTACCATCTGCAAGTAATTATGGAGCTTGTGTTTTGTTTGAAAAGATAGTTGTGTTCATTTTACTCATACATTTACAG
Seq C2 exon
ACTGTCTCAGCTGCTGCCAAGAATGGTACGTCATCGAACAAAAACAAAGAGGATGAAGACATAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115145:ENST00000263904:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=0.667
Domain overlap (PFAM):
C1:
PF0079014=VHS=PD(28.5=79.6)
A:
NA
C2:
PF0280915=UIM=PU(50.0=37.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains