HsaINT0161114 @ hg38
Intron Retention
Gene
ENSG00000165209 | STRBP
Description
spermatid perinuclear RNA binding protein [Source:HGNC Symbol;Acc:HGNC:16462]
Coordinates
chr9:123132845-123136181:-
Coord C1 exon
chr9:123136041-123136181
Coord A exon
chr9:123132969-123136040
Coord C2 exon
chr9:123132845-123132968
Length
3072 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
AAAATGTGTTATTTTAACAGGCA
3' ss Score
7.71
Exon sequences
Seq C1 exon
GTAGAAGTAGATGGACAGAAATTCAGAGGCGCAGGTCCAAATAAGAAAGTGGCAAAGGCGAGTGCAGCTTTAGCTGCCTTGGAGAAACTGTTTTCTGGACCCAATGCGGCAAATAATAAGAAAAAGAAGATTATCCCTCAG
Seq A exon
GTATGAGTAAACATTAAACCTTTGCAGAACCTGTGAAAAATGTTAGAGGAATTAAATTTTCTTTCCTGTCCATGTGGCACTTTAGCTTTTTCTGAAGTTGTTTCCTTTTCTTGGACTTGGTGACCTTTGCTTTGGGTTAGGTCACGAATAATATAAATTTGATTAGTGGTTTCATGTTCTATGGACTTTCTAAACAAAATATATATGTACATGTATATTTATATTTATATGTATATATGAGGCTATTAGCATTATTTGGAGGGTTGAGGTCATTCTTGATGAAGTCAGGTTTTGAGGTGATTTGGACCTTAGTGAGGTCTAAGCAGTTTAGTTTGGGGAAGCTGCCAGGAGCACCTGGGGCTTTGCTTTCATCAGCCTGCGGGTGCTCTTCCAGTTCCTTTGCAGTTTCGTGCTTTTGCATTGTTTATTTTGGGTTTCCTTTGCCGACCGCATAAAATTTGGCGCTGTATTGTGTCTGTTCATTACTGACACTGGGAATGTCAGTGCTACTGAATGTCCAGGATCTTAGCAAGGTATTTAGAAAAGATGGCCCTCTAATTACATGCTTGTGGATATGAGATTCTTCCATCCATTCATTTATGCATTCAAAAAACATTTTCTAGTCATACATCATATGCCTGATAGTGAGGGAAAGAGTAAGTAAATATAAGACACATTGTGCCTCATAGAGAGTACTGGTATAATAACATAACATCTGAATATATTATATGATAGAAATTAAAAATGCTTAACGTAATAAAAAGAAGCTTAGATTGTTTAATTCTACATTAAACATTATATTTAGATTCCATTATGTATGCTATGTCCATTGTAGGAGGGTAGAATTGATCTTATTTTACAGGTAAGGAAACAAGGCCCAAAGAAATGGAAATACTTGCCTGTGGTAACACAGCTAATTGATGGTGGGGGTTCCTTCTAGAACCAGGTAGTTCTCCCAAAGGCCATGGACATTTTACTATTGCATATTGTATCCATCTCAAAATTTGTTTTGTATTCATTTAAATTTCTTGTATTTGCTATAATAAACACTGCTTAAATTCTAGGATCCAAAAGGTAGAGAAAACTTATTTTAATGAGATGAAAAAATTTTTAAAGCCTTTAAATTACGCATGTCGAAAACAAGTAGATTTTATTTTCTAAAATCTTCTGGTAAACATAGAACAAAGTATGTTCTAAATTAGTTGAAAGATGATTCTTGTTTTATGAGCTTGTTTTATGGTGTTTTTTCCCATATTACATCTTATGTTTGGTCAGTTAATTTTAGTTTAAAAAGCCCATGTGCAAATATTTATTAGGTAGTTAAGTTTGTTCTACTAGACATGAGCTAGATTTGTGTGGAATCATTCTGCTACTGCCAGATTGTTGCTTGCTGACTACTTTTGACTAAGTCATGTTAAAAAAAGAAAGATGTCTACATGAAGTTCACTCATTTTTAGAAATTTTCCATACTATAAGCTATAAAACTCATGTGTTCAATGTGCTTGACGGCCAAGAAGCAATCTATTTTGGATATGTGGGTTGGTTTATTTCAGAGAAAAACAAAAACGGCAGTCCCTGTGCATGACACAGTTAACCTTGAAACTGTCTCCTGCCCATTCATACTAGAGGTAGAGGTTCCTGCCCATTCATACTAGAGGTAGAGGTTATCCTGGAAAGAATAAAGGATGTTGCATTTTCAAAGTGAGATAAACCAATGTGTATGTATTCTGACTCTTTCAGCTTCTTAGACACTGTTGACTTTATCATAGAGTACGCTTTGAGGCTTTGCACCACTTTCTTGCACCTTGGTTATAGTGGGGAATCTTAATTGTTTCTAGCTTGAGTTTTTGTTGCATTTCTATAAGTATAATATTCAATTTGAAACTAGACACCTTTTGATTTTCTTAAAATTTAGTTTGGAAAAGAGGTTTTTCAACAGTCCTGTTTACTGTTACTCCCGGTGTTATCTGTTGTATTTTTAGAATGTTTTTATATCTGTTCTCTCGTTGTTCTTTCTACTCTAAGGAAAACAAAGTATCATTATTCTCATTTTATAATTCTCGGTTACTGTTTCAACTCTAAGGAAAACAAAGTGGGTATCATTATCCACATTTTTAATTAGTGGGGAGATTTCCATAGATTATGGCATTTTAGAGAAAGAAGGGGCTTTCAAAGTGGTATTTATTTATTTAATAATGGGGCCAGGTGCGGTGGCTCACACCTGTAATCCCAGCACTTTGAAAGGAAGCTGAGGTGGGCAGATCACTTGAGGTCAGGAGTCAAGACCAGCCTGGTCAACATGGTGAAACCCTGTCTCTACTAAAAATACGAAAATTAGCCAGGTGTGGTGGCGGGTGCCTGTAATTCCAGTTACTTGGGAGGCTGAGGCAGGAGAATCACTTGAACCTGGGAAGGTGGAGGTTGCAGTGAGTCGAGATCGCACCATTGCACTCCAGCCTGGGTGACAGAGCGAGACTCCGTCTCAAAAAAAAAAACCAAAAAAAGATAATTAGTAGTGGATACATACATACACAAACAGCAGAGGAATCGGGCTCCAAGAAATCATATTACCTTCCTGAGGTCACAGTTACTTAGAGCAGGAACTGGCATCCTCATCTTTGGTCCTCCTGTCTTAGTCCTTTATGTTTTCCCCCCACTAGCCCCACTCAGATTCGCAGTTAATTCTATGTAATTAGTTGCTCAGATATTTTCTGCCTGTTGGCAGATAATTTACTGGATTTGGAACCTAGGTACCAAGTGTGTATGATTACTTTAGTAAGGCCTAAAATGACTTTGGATATAAATTGATTACTGAAATTTGGTGTAGAAAATGAACTCTTTCTGGATAACCCTCAAGCAAAAAGAAGTTATTTGCATATTCTCTTAACATCTCTGTAAGGTAGGTATCATTTTTGTTTTTCAGATGATAAATTGAAGGTTCAAGATCACAGACAGCTCATGGTCTCACCCACGTGCTCACAGTTTCTCATAGTTGTTGTGCGTTGAAGAGATGATAGAAGAAATAAAATGGTTCTTATTTCTTTCAGTAATGAAAATGTGTTATTTTAACAG
Seq C2 exon
GCAAAGGGCGTTGTGAATACAGCTGTGTCTGCAGCAGTCCAAGCTGTTCGGGGCAGAGGAAGAGGAACTCTAACAAGGGGAGCTTTTGTTGGGGCGACAGCTGCTCCTGGCTACATAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165209:ENST00000348403:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.277 A=NA C2=0.003
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PD(46.0=61.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains