RnoINT0145343 @ rn6
Intron Retention
Gene
ENSRNOG00000010150 | Strbp
Description
spermatid perinuclear RNA binding protein [Source:RGD Symbol;Acc:620673]
Coordinates
chr3:21838945-21844859:-
Coord C1 exon
chr3:21844719-21844859
Coord A exon
chr3:21839069-21844718
Coord C2 exon
chr3:21838945-21839068
Length
5650 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
TATTGTTGTTGTTACTACAGGCA
3' ss Score
5.52
Exon sequences
Seq C1 exon
GTAGAAGTAGATGGACAGAAATTCAGAGGTGCAGGTCCAAACAAGAAAGTGGCCAAGGCAAGTGCAGCGCTAGCTGCCCTGGAAAAGCTGTTTTCTGGACCCAATGCAGCAAATAATAAGAAAAAGAAGATCATTCCTCAG
Seq A exon
GTATGAATTAAGCAATCTTTGTAATAATCTCGAATTTTCCATTCATTTCCTCCTTTACTTTTTAAATTTTATTTTTGTAAACCCAATACTTGAGAAGTTAGGTGGGTAGATAGATTCCTTTAAGTTCCAGGCTATCCTAGTCTACGTATCAAGTTCCAACCAACCAGGGCTACACGTTTATTTTTGTCTTTCTGAATGTATACCATATTGAACAGGTACTTAACAGAGCCCAGAATAGGGTGTGGGCTGGAGTTGCATATGTTATAGGCAGCTGTGAGACATTGGAAGTAGATACTGAGAACCAAACTCGGCAGTGAGGTGAGCCATTTCTTTTATCCCTGTCAGATTTTTAGTTGATGTATAAGGTAATGGGTTTCATTATCACATTTTTTTTTTCTTTTTTCTTATTTTCGGAGCTGGGGACTGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTTCCACTGAGCTAAATCCCCAACCCCTCATTATCACATTTTTACACATATTTGGCATTGTATTTGTTTTTCCTCCAACCCATTGCCATCTCTGCTCTTCCAATCCTTTTCCCCCTGACTGGTACCTTCTTCCAAATGGTCTTATTTTGCATAACATGACGATCTCCATTTCTTTCTATTTTTCTGGAATTAATTTTGTTTTCTTTACAGCTAAATATAATATCCCTGTACACATACCCATACACCCATCACATTTTCTTTATCCATTAGTCTATTGATGGCCTTCTATGCTGATTCTGTATCCTGACTATTGTAGATACTCTAGCAATAGATATAGATGTATAAGTATCTTTTTAGCGTACAGACTTAGAATCTAGAATCATTTGGGACTATACCTGTACGAATGGTATAGGTGTGATACATATTGTAGTTTTATTTTTAATTTCTTGCAGAACTTATATATGATTTTTCATAGTAGCTACCAAACTTATAACCAGCAGTGAATAAATATTAATTTAAAAATACTTATTTTGAGTGTATGAGTATTTTGCCTGTGTGCATATATATGTGCACCATGATCCCCTGGAACTGAGATATCGGTAATTGTGAATTGCCATGAAGACCTTGGGAATGAATCTGGATGATCTAGCCAGTGCCCCCAACAGCTGAGCTATTTCTTCAGGCCCCATGAGTTGGATTCTTAATCTATATCTTTGCTAGAATTCATTGTTTCTCTGTATGTTGTTAGGGTGCTAGAGTAGTACTGGTAGGATAAATCTGAGAACCTTGGGCATACTACGCAAACAATACCACTTATCTATTCTTGTAGCCCTGTTGTCTTGACATTGGTTTTTCTGATTTGGTTGAGATGAATGAAACCTCAGTGTAGTTTTCATTGTTACTTTCTGATGGTTAAGGATGTGTTGAACATTCTTTAAAACATTTATGGCCATTTATATTTTTTCTTTAACAGTTGTCTATTCAATTTATTAACCTCTGTTTTTGAGTACTTTTTTTTGGGTATTTAAATTTTAGAGTTCTTTACAAATTGTTGATAACTCCTTGTCTGATATATAATTGACCAAGACTTTTCTCCCATTTTATTTTGCACACCATTTTTTTGACAGTGTTTTTGCTTTGTAGTGGGAGCTTTTTGATCTCATGTAGCCCTATTTCCTTATTTAGTTTACTATGCCATTGGAGTTCCTTTGTGAGTTGCACATCCTATATCCAAGTCCCACTCATCTCCCTGCCCCTCATGTCTGCCTTCTGCCTTGCAAGTTCCTCCAAGTAAAATACAAAATAAACCAAAGTATAGGAAACATCTCAATCAATCATGGAAGTTGTCATGTGTCACGGTTCGTCTTATGATATAACCCTGTCCATATATCTTCACTTATGAATGTTCATGGCAATGAGTCATCAATCTTGTTTGAGGTTTCTATCACACTGTCAATATTAGATCCTCACCCAGCCTCCTCCTGTTTATCCTGTTGTTGCCCTATGTGGTGGAAAACCTTCAGCTTTGTAACAGTAGGACTGGCTCTTTCACAAGCCTCAATAGTTCATAGATGATGTAGACATCGTGTCAGATGATAGCTGAGCCTGTCAGCTTGCTAGCTCCCCCTTATCTACACTACAGGGCGACGTCTCCCATCACTGCCCAGGCTAGGCCACCTTAGTGCCACCATAGTCAGAGGGCAGGGTCAGGTCTCTCATGCTTGGTCACCCTTGGGACTGGGTTACCTGTCCCTCCTCCACCAGGGCCAGTGCCACTGTGCTGCCCTGGTAAGGTACAGGACCTCTTGCTTTCATGACCCAGTGACCCAACTCTCTTGATTGCTGCAGGTGGCAAGGGGGGTGAGCATCACCTTCATACCTGCACCACTTCACAGGCTACTACCTCACAGCAGGCAGACAGGACCAGGGGCAGCTTAGTAAGGCCAGCACTTTCCAAGTGCTGCCTCTGGTGAGAAGAGACCTTCTTATGACTGATCTCACCACAGTAGCCAGAGGTCTCAGTCCAAGGCAAGTAAAGTGGAATTTTTTTTTTTTAAATCATGAAGAGATGTTCAACTTTTTCAAAAGCCCTTTCTGTATTTGTTAAGGTGATCCTGCGATTTCTGCCATCAAATTTGTTTTTGTGTCACTTTAACTGTTTATGAAATTGTTTGTTTACTGACTCTTTTTCCAGGCAAGATTTCTCTGTGTAGCCCTGGCTGTTTTGGCACTACCTCTTTGTAGACCTACCTGGTCAGCCTTGAATTGTGCTTCCTTAGTGCTGGGATTAAAGGCAGCTGCCACTAGCACCTGACTGAAATTGTTTATTCTTAGTGACTTAGCACCTTTTCTTTGGGATAGGTTCTGAATAATACATACTAAGACAATACTTCTCTTTTCAGTGCACTTTTTTTTTTTTTGATTTATGCCCATAATTTTATGGGGAGTGAAGTCATTGTTGGTATAGTGAAGAATGGCGGTGATTTGGGCATTATAGTGGTATGTCCTTGTACAGGGTGGGGTGGGGAGGATGAGAAAGGACAGAGTGTGTGCAGATAACTATATACATTAGCACAAGATTTTCTTCCACCCTTTCATTTTTGTATCACAAAGATACTTTTAGACATGAGGGGAAGAGATAATAATGTGAGTAAAATATAAGACAAATTGTCTTCTTCATATTGAGTGCTGGTGGTGATACTAATCTGAAGACATTGTGTGTTAGAAACAAATATGTTAGGGATTTAAACAAAAAAAAGGAGCTTAGGATGCTTTTGAGAATGTTTTGTAGTCTTGTGATCTGAGTCTGAAATGTAAGAGAACAACTGAGAAAAACATGGAAGCAATTGCATGTTCCTTTAGTTCCCCATTGTTAAATCTTTCCTCCTCTTCCTCCCACCCCCCCTTCTTTTAGCTTTGCCTTGTGTGGCTGCCTTTGGAGTTTTTGAGACAAGTTCTCACTCCAGAGCACAGGCCAATTTTTAACTTATCCTGCTGCCTCTGTCTCCTATGTTCTGAAATTCTGGACATGCACCACCATTCTCAGATCTTTTCTCTTTTTCTTAGATGTTAGTCATGATTTCCTCTATAACTATTTCTAGATGATTAGATAGTGCTGGGGTTACAGAAGAAAGACTAACAGGGAGAAACTGTTTCTCTAGCTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATTATAGCAGATCTTCTATATCTAAGGTCATAGAAAGAGGGCAATCACCAGTCTTCCCCCCCCCCCCCCCCTTTGTTGCCTAGCCTTAGTAACTGTAGTTAAAGTGAGATTACTGGTAGAGTTTTCCCTGTTGGTTAAGTTCCTTCCAGCGTGTACCACTATTCAACTAAGTTGTCTTATAGACAAGGAGGACTAGTATTGTTCCCACGATCCACAGCCATTCTGTATGTTACTGGGGGACGCTGTTATTTAAAGAAACAATTTGCATTTGTTTCTCACTACCTACCCGGTGGCTCCAGTTCCAGGGGACTTGATGCCTTCTTTTGACCTCCACAAACACCAGTCATGCATGTAGTGTGTACACAAGCACACAGAGACACAGAGAAACATAAGCATGCATGAACAGCATTCTTACAAAATAAATTAATGTTTATTCTAGGTTAAAGTATTTATTAATTAGCCAATGGAGTCTGGTAGTAATAACATAAATTAGATCTATGTTGAGTCACTCTGCAATTTGATTACTTTCATTACTTGGATATAGACTGTGTCTTTTTTTTTAATTTTTAAAATTTTTTTTATATATTTCTTTACTTAGATTTCAAAGGTTATTCCCCTTCTTGGTTTTCTGTCCATAAGCCCCCATTCTCTCCCTTCCCCCTCCTCCATAGGGGTATATTCCCCTGCACTGGGGGTCCAATCTTGGCAAGACCAAGGGCTTTCCCTTCCACTGGTGCCCCAACAAGGCTATTCTGTGCTACATATGCAGTTGGAGCCCTGGGTCAGTCCATGTATATATAGTCTTTGGGTAGAGGTTTAATCCCTAGAAGCTCTGGTTGGTTGGCATTGTTGTTTTTATGGGGTTGCAAGCTCCTTCAACTCTTTCAATACTTCCTCTAATTCCCCCTAAGGGGGTCTTATTCTCAGTTAGGTGGTTTGCTGCTAGCATTGACCTCTGTATTGGACATTCTCTGGATGTGTCTCTCAGGAGAGATCTATATCCAGTCCCTTTCCGCATGCATTTTTTAGCTTCATCAATCTTATCTAGTTTTGCTGGCTGTATGTATATGTGCCACATGTGTGTCAGGCTCTGAATGGCCATTCCTTGAGTCACTGCTCTAAACTTTCCTTCCATATTCCCTCCTATGAATATCTCCCCGCCCCGTTTAAGAAGGAGTAGGAGCATTTGCATTTTGGTCATCTTTCTTCTTGAGCTTCCTGTGGTCTGTGGATTGCATCTTAGGTAATTTGAGCTTTTTGGCTATTATCCACTTATCAATGAGTTCATACCAAGTGTGTTTTTCTGTGACTGAGTAACCTCATTCAGGATGATTTTTTTTAGTTCATTCCATTTGCCTATGAATTTCATGAAGTCATTGTTTTTGATAGCTGAGTAGTACTCCATTGTGTAGATGTACCACATTTTTTGAGTCCATTCCTCTGTTGAAGGGCATCTGGGTTCTTTCCAGCTTCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGTACGTGTCTTTTTTATATGTTGGGGCATCTTTTGGGTATATGCCCAAGAGACGTATAGCTGGATCCTCAGGTAGTGCAATGTCCAATTTTCTGAGGAACCTCCAGACTGATTTCCAGAGTGGTTGTACCAGTCTGCAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCTACATCCTCGCCAGCATCTGCTGTCACCTGAGTTTTTGATCTTAGCCATTCTCACTGGTGTGAGGTGAAATCTCAGGGTTGTTTTGATTTGCATTTCCCTTATGACTAAAGATGTTGAAACAAAGTTACTCAAATATTTTCATACAATTAGCACATTCTTCAGTATAGTTCTTTAAGGTAGGTGCCATATCTGTTTTGCAGATGGTCAACTGAAGTCTAACCATAGATGCTTTACTGTCTCAGCGGAAGCTTCACAGTAGATGAGAGGCAGAAAGTTCTTTCTCTCCATCATGGAATTATTGTTGTTGTTACTACAG
Seq C2 exon
GCAAAGGGTGTTGTGAATACGGCAGTATCTGCAGCAGTCCAGGCAGTTCGAGGCAGAGGAAGAGGAACTCTGACAAGGGGAGCGTTCGTGGGAGCTACAGCAGCTCCTGGATATATAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010150:ENSRNOT00000066377:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.327 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0003520=dsrm=PD(46.0=61.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]