HsaINT0161632 @ hg38
Intron Retention
Gene
ENSG00000165416 | SUGT1
Description
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone [Source:HGNC Symbol;Acc:HGNC:16987]
Coordinates
chr13:52657532-52658226:+
Coord C1 exon
chr13:52657532-52657622
Coord A exon
chr13:52657623-52658098
Coord C2 exon
chr13:52658099-52658226
Length
476 bp
Sequences
Splice sites
5' ss Seq
GTGGTAACG
5' ss Score
4.76
3' ss Seq
ATTTTGTACCTTCTGAATAGGGA
3' ss Score
7.31
Exon sequences
Seq C1 exon
GAGCTGACTAAGGCTTTGGAACAGAAACCAGATGATGCACAGTATTATTGTCAAAGAGCTTATTGTCACATTCTTCTTGGGAATTACTGTG
Seq A exon
GTAACGTTTCTTATAAAGTATATTGCCCCCTTTTAATAAGTTACTTATACATTTTACCCATGACAAATTAAAAGTTGTCTTTGAGAATTTTTAAATTGGTCTTTTATACAAGGTAAAGTAGCTCAAATGTGACAGACATGTTGAGCAACACCCATTTAAATTTTATGGATGTCGCTTTTTCCTTCATTGGGTGGAGAATGTATACAGATTTCATTCATAGTTATTGGGTATGCTGATAAAAAATAGCATCACATTTACTATTTGACAGACTATTAAAATGAAATGCTCGTTTAAATTTTTTTTATAAAAAAGAATGTGGCCAGGCATGGTGGCTCACGCCTGTAATCCCAACACTTTGGGAGACCAAAGCAGGAGGATCATTTGAGCCCAGGAGTTCAAGACCAGCCTGGGCAACATAACAAGACCACCTGTATTTAAAAAGTAATGTATTTCTGTATTTTGTACCTTCTGAATAG
Seq C2 exon
GGAAAAACTGAATACCTTGAGTAAAATTACATAGAAAATGTTAATGAGACAAGGAGGTGAATTTTGTGACACAGCTGTATTCATTGAAGAGCTTTAAGAAGGAAGCTAAATGTTAAGCCAAAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165416:ENST00000483074:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.145 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(52.6=100)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGACTAAGGCTTTGGAACA
R:
CCTTTTGGCTTAACATTTAGCTTCCT
Band lengths:
215-691
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains