HsaINT0162003 @ hg38
Intron Retention
Gene
ENSG00000148291 | SURF2
Description
surfeit 2 [Source:HGNC Symbol;Acc:HGNC:11475]
Coordinates
chr9:133360265-133361169:+
Coord C1 exon
chr9:133360265-133360434
Coord A exon
chr9:133360435-133361055
Coord C2 exon
chr9:133361056-133361169
Length
621 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GAATTTTGTTTATCCCACAGAAG
3' ss Score
7.5
Exon sequences
Seq C1 exon
CTGAGCTATTCACCAGAAAGGACCTTGGAAGCACGGAGGATGGGGATGGCACTGATGACTTTTTGACAGACAAAGAGGATGAGAAGGCAAAGCCCCCAAGAGAGAAGGCCACTGATGAGGGCAGGAGAGAGACGACCGTGTACCGAGGGCTGGTCCAGAAGCGCGGGAAG
Seq A exon
GTGAGCTGTCACCTCCTCTGTTAGTGTGGCAGTGGCTTCCCCTAGTGATGGTTTTCCATTTGTTTAAAAAAAGAAAACTGAACCTTTTTCACAAGTGAAATCCCAAGCCAACAACACACAAGAACCATAGAAGCCGAGGCCGCTGGCTGGCGGAAGGCCGTGAGTGCCTACCATTGCTTCCCAGCCAGCCCCTTGTGGAAGCCAGGCTCTGTGGACCACGGTCAAGACCACTGGTTTGTGAGGACACCCTCCTACCTCAGACTATGAGCTGTGGCGTGTTTGTCCTTACCCCTGGGCACAGGGACCTGATTACTAGCCACCACCTTTGCCTTTGCCATCAGGGCAGGAGTGGAGACTTCCCCGCCTTTGGTAGATAAGCAGGACCAAGGCCAAAAGAGGACAAGGTCCTAATGAGTGTGTGGCATTGCACTGTACTCCTCTGAGGCCCTGCTGAGCGGGGTCTAATCCTGCAGCTGTTAAGGAAACGGGGGTGGAGAAAGCCTCTGTGGGTATTTGACCGACACCTCTGAGGCTGTGTGGGTGGGGAGAGCCCTGCACTCCAGGGCCCCTTCTCCATGGGATCAGAAAGGCTCAGTAATCAGAATTTTGTTTATCCCACAG
Seq C2 exon
AAGCAGTTGGGCTCGTTGAAAAAGAAGTTCAAGAGTCATCACCGCAAACCCAAGAGCTTCAGCTCCTGTAAACAGCCAGGTTAATAAAAGCACATGCCGTGAAGTTTCGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148291:ENST00000371964:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.982 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF054776=SURF2=FE(22.1=100)
A:
NA
C2:
PF054776=SURF2=PD(9.1=82.1)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTATTCACCAGAAAGGACC
R:
TCTCGAAACTTCACGGCATGT
Band lengths:
281-902
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains