Special

HsaINT0162003 @ hg38

Intron Retention

Gene
Description
surfeit 2 [Source:HGNC Symbol;Acc:HGNC:11475]
Coordinates
chr9:133360265-133361169:+
Coord C1 exon
chr9:133360265-133360434
Coord A exon
chr9:133360435-133361055
Coord C2 exon
chr9:133361056-133361169
Length
621 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GAATTTTGTTTATCCCACAGAAG
3' ss Score
7.5
Exon sequences
Seq C1 exon
CTGAGCTATTCACCAGAAAGGACCTTGGAAGCACGGAGGATGGGGATGGCACTGATGACTTTTTGACAGACAAAGAGGATGAGAAGGCAAAGCCCCCAAGAGAGAAGGCCACTGATGAGGGCAGGAGAGAGACGACCGTGTACCGAGGGCTGGTCCAGAAGCGCGGGAAG
Seq A exon
GTGAGCTGTCACCTCCTCTGTTAGTGTGGCAGTGGCTTCCCCTAGTGATGGTTTTCCATTTGTTTAAAAAAAGAAAACTGAACCTTTTTCACAAGTGAAATCCCAAGCCAACAACACACAAGAACCATAGAAGCCGAGGCCGCTGGCTGGCGGAAGGCCGTGAGTGCCTACCATTGCTTCCCAGCCAGCCCCTTGTGGAAGCCAGGCTCTGTGGACCACGGTCAAGACCACTGGTTTGTGAGGACACCCTCCTACCTCAGACTATGAGCTGTGGCGTGTTTGTCCTTACCCCTGGGCACAGGGACCTGATTACTAGCCACCACCTTTGCCTTTGCCATCAGGGCAGGAGTGGAGACTTCCCCGCCTTTGGTAGATAAGCAGGACCAAGGCCAAAAGAGGACAAGGTCCTAATGAGTGTGTGGCATTGCACTGTACTCCTCTGAGGCCCTGCTGAGCGGGGTCTAATCCTGCAGCTGTTAAGGAAACGGGGGTGGAGAAAGCCTCTGTGGGTATTTGACCGACACCTCTGAGGCTGTGTGGGTGGGGAGAGCCCTGCACTCCAGGGCCCCTTCTCCATGGGATCAGAAAGGCTCAGTAATCAGAATTTTGTTTATCCCACAG
Seq C2 exon
AAGCAGTTGGGCTCGTTGAAAAAGAAGTTCAAGAGTCATCACCGCAAACCCAAGAGCTTCAGCTCCTGTAAACAGCCAGGTTAATAAAAGCACATGCCGTGAAGTTTCGAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148291:ENST00000371964:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.982 A=NA C2=1.000
Domain overlap (PFAM):

C1:
PF054776=SURF2=FE(22.1=100)
A:
NA
C2:
PF054776=SURF2=PD(9.1=82.1)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
ALTERNATIVE
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTATTCACCAGAAAGGACC
R:
TCTCGAAACTTCACGGCATGT
Band lengths:
281-902
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains