MmuINT0155264 @ mm9
Intron Retention
Gene
ENSMUSG00000014873 | Surf2
Description
surfeit gene 2 [Source:MGI Symbol;Acc:MGI:98444]
Coordinates
chr2:26774712-26775690:+
Coord C1 exon
chr2:26774712-26774878
Coord A exon
chr2:26774879-26775246
Coord C2 exon
chr2:26775247-26775690
Length
368 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
AGCATTTTCTGCTTTCACAGAAG
3' ss Score
6.08
Exon sequences
Seq C1 exon
CTGAGCTGTTCACAAAGAGAGAACTAGGCAAGCCTAAGAACGATGACACTCCTGAAGACTTTCTGACAGACCAACAGGATGAGAAGCCGGAGCATTCAGAAGAGAAGAGCTTTAGAGAGAGGGAAGAGGCCAGAGTGGGCCACAAGAGGGGTCGTAAACTGAGGAAG
Seq A exon
GTGAGTGGTGGGCTGCAGAGTGCTGAGGGTAGGGGGCTACTCAGCAAATTCTGCAAGTGCACTTGTCGGGTAGCAGCCTAAAATATGGAAGCCAAGGCCACTTTAGAAGGTCTGCAGGAGTAAGTCCTGACTGCTCAGGAACTTCACTGCTGGGTACTCCCTCTCTATGGGACAGGACTGAGTATTCTGTCAGAGAGGAGCAAGGTAGACAAAGTCTCTAGTCACCTGTGTTGCCCTCTCCCAGGCCCCACACTGACCCAGCAATAGAAGTGTTGAGAAGGCAGACTTAAGGCTCTTCCGGCTTAGACACACAGTGCCTTTCCCTGTGAACCTGCAGAGGCCCTGGTCAGCATTTTCTGCTTTCACAG
Seq C2 exon
AAGCAGCTCACCTCCTTGACCAAGAAGTTCAAGAGCTATCATCACAAGCCCAAGAACTTCAGTTCCTTTAAGCAGCTGGGGAGATGAAGCCTGCAAAAAAAGCCTTTGGATGTCCTTGGAAATGGCCACTGATATCCTGACATTGGCTGTTGTCCAGAGTGGGCCTGGAGGTTCTGTTCAGAAGATGGCAGCGTCGGGGACTTGCATGGCTTTCTCTGCAGTGTTGAGTGACTCTTGCTGTAGCTCACTGTAGCATCCCGAAGCCTAGCCAGGCTCCCAGCTCTGGCTGCTCACCATATAGGACCACACTATATACCACAAATGCCATTATTTATTTTGATGTTTCCAAAGATCAAAACATTTTCAAACACAACTAAGATATAAAATACAGCATAAAAATGAGGTTTATACCTATTCCCACATAAAGCTAAAGCATCTTCAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014873-Surf2:NM_013678:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.750
Domain overlap (PFAM):
C1:
PF054776=SURF2=FE(21.7=100)
A:
NA
C2:
PF054776=SURF2=PD(9.1=79.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAGAAGCCGGAGCATTC
R:
CTTCGGGATGCTACAGTGAGC
Band lengths:
354-722
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: