HsaINT0162039 @ hg38
Intron Retention
Gene
ENSG00000099994 | SUSD2
Description
sushi domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30667]
Coordinates
chr22:24185094-24185571:+
Coord C1 exon
chr22:24185094-24185295
Coord A exon
chr22:24185296-24185485
Coord C2 exon
chr22:24185486-24185571
Length
190 bp
Sequences
Splice sites
5' ss Seq
TTCGTGAGC
5' ss Score
3.45
3' ss Seq
AGCCACCTGCTGCTCTGCAGACG
3' ss Score
5.39
Exon sequences
Seq C1 exon
GGACGTGCAGGCGCTCTGGACCAACGACCACGCACTGGCCTGGCACCTGAGCGATGACTTCCGAGAGGACCCTGTGGCCTGGGCACGAACTCAGTGCCAGGCCTGGGAGGAGCTGGAGGATCAGCTGCCCAACTTCCTGGAGGAGCTGCCGGACTGCCCCTGCACCCTGACCCAGGCCCGGGCTGACTCCGGCCGCTTCTTC
Seq A exon
GTGAGCCTCCCATCAGGGCCCAGGAGAGGGGATGAGGGGTTAGCCTCCCCACTGAGGACAGCACCAGGGGAGGCAGACAGAGGTGTCCTGGAGGGTGGGGCTGGGGTCTCAGGACCCCTGCAGGGTTGGCCTCAGGGAGGGGATGACAGAACCCGAGGCCACTGGGTGACAGCCACCTGCTGCTCTGCAG
Seq C2 exon
ACGGACTACGGCTGTGACATGGAGCAGGGCAGCGTGTGCACCTACCACCCCGGGGCCGTGCACTGTGTGCGTTCTGTGCAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000099994:ENST00000358321:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0378212=AMOP=PU(27.4=58.8)
A:
NA
C2:
PF0378212=AMOP=FE(19.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCTGAGCGATGACTTC
R:
CTGCACAGAACGCACACAGT
Band lengths:
242-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains