RnoINT0146226 @ rn6
Intron Retention
Gene
ENSRNOG00000033389 | Susd2
Description
sushi domain containing 2 [Source:RGD Symbol;Acc:1308595]
Coordinates
chr20:13968493-13968962:+
Coord C1 exon
chr20:13968493-13968694
Coord A exon
chr20:13968695-13968876
Coord C2 exon
chr20:13968877-13968962
Length
182 bp
Sequences
Splice sites
5' ss Seq
TTCGTAAGC
5' ss Score
5.42
3' ss Seq
GCCCCCTGGATGTTCTGCAGACT
3' ss Score
6.8
Exon sequences
Seq C1 exon
GGATGTGCTGGCCCTCTGGACCAATGATCATGCCCTGGCTTGGCATCTGGGTGATGACTTCCGGGCAGACTCTGTAGCCTGGGCCCGTGAACAATGCCTGACCTGGGAGGCGTTAGAAGACCAACTACCCAACTTCCTGACAGAACTGCCAGACTGCCCGTGCACACTGGCTCAGGCCAGGGCTGACTCTGGCCGATTCTTC
Seq A exon
GTAAGCCCCTGGACCCATTAGGGCCCCAGAGAGCGGGAGGGGGACAGGAGGGGGGCCAGCCTCCCTGACTGAGTTAGACAAGGCCACCCCGGGATGGGGGGGTTGAAAGATCTCCTTGGGGTTGGTTCCTGGGGAGGGAGGGAATGCAGAGCCCAGGTGACAGCCCCCTGGATGTTCTGCAG
Seq C2 exon
ACTGACTATGGTTGTGACATTGAACATGGCAGCGTGTGCACCTACCACCCAGGGGCTGTGCATTGTGTGCGTTCCGTGCAAGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033389:ENSRNOT00000066773:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0378212=AMOP=PU(27.4=58.8)
A:
NA
C2:
PF0378212=AMOP=FE(19.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGATCATGCCCTGGCTTGG
R:
ACACAATGCACAGCCCCTG
Band lengths:
248-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]