HsaINT0163993 @ hg19
Intron Retention
Gene
ENSG00000107021 | TBC1D13
Description
TBC1 domain family, member 13 [Source:HGNC Symbol;Acc:25571]
Coordinates
chr9:131554771-131559493:+
Coord C1 exon
chr9:131554771-131554853
Coord A exon
chr9:131554854-131559333
Coord C2 exon
chr9:131559334-131559493
Length
4480 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGC
5' ss Score
7.85
3' ss Seq
TTCCTGTTCCCTCTTGACAGGAG
3' ss Score
10.22
Exon sequences
Seq C1 exon
CCACTCAACCCCAACCCTGACAGCCGGTGGAACACGTACTTCAAGGACAACGAGGTGCTGCTGCAGATCGACAAAGATGTCCG
Seq A exon
GTAGGCAGGGTGCCTGGGGCCGGGAGCTGGCCCATGGGACTTCTGGGGCTCTCTGCAGCTCTGTCTTTTCCATTTGCAGGCCGGGCCTATGGGTGAGTGTTTGCGGAGCTGCTGGTGGATTGTCCCAGCGGTTGGGTCCAGGCACTATTGATGATAGGCTGAGAACGAGGCTAGCGAGGGAGATTCTGTGCTTGCATGTACCTGGCTGTTCTTATCTGAGCTGTAGTTTCATTTGTACCCCAGGTGTTTATGGATTCATCTGACATTCATTCAACAAGTATTGAGCCCCTTTTGTGTGCCAGGCTTAGCACTAAGTTCAGGGTTGAGCACTGGTGTGTTCCCTCTCCTTAAGGATCTTAGAACCTAGAAGGGAGGATGGCAAGACAGACATTCAGCCCATTAGATCTTAGCAGATGGCATTCGTGGTAAATGCTCCTGAAGGAAAATTTGAGGGGGTTTGGGGAAACCTCACCTGAGAAGCAGTGATTCAGCTGAGATCTGAGGAGTGGGAGGCCTCAGGGGAAGAGTGCAGCAAAGGCCATGTTGGGCAGGGAACTGCCCTTGGCAAGGTCCAGAGAGCCCGCAGAGCTTGGCACATCTGAGGAACAATGCCAAGGCCAGGGTGGGAGATAGGGGCTGGACCTTGGACTTGATTCTAAGAGCATGAGGCAGCCATGCAAAGGTTTTGAGTAAAGGAGTGACAGGGTCAAATACACAGTTTTTAAAATCTTGAGCTACAATGTGTTTGTGCTTTTCCACTTGGTAAAGAAATGTGGAGATGCTGGCTGTGCGGCCCTGTCGGGCTGGGGAGTTTGGCAGCGTGTTGGGCTAGGTGAGGAGCTAGAAGGCAGGCCTTGTCCACAGGTGGGTGGAGTGGCCAAGGGCTTGGGTTCTGGAGTCCATTTGCCTGGTTTCCATTCCGCATTTACCAGTTGTTAGCTGTGTGACCTTGGGCAAGTGACTCACACCTTCTGATCATTACTCTATTGTGAAGTAGGAGTAAGGTGGTTCAGGCTAAGGGCACAGAACGGGCTGGGTCTCCACAGATACGTGGGACTTAGCACTTACAGAGGCCCTTAGAATGATCAGATCTCCATCAGAGAAGGGTCCTGGGAGCTTATCCTGTTCCTTTTACAACAGCCTGCCTGGGACCCCCGGCACTTGGTTAGACAGAACAAGCTGGCACTCTGACCCGCAGTGACCCTTCAGAATCTCCAAGGGGCAGCTCTCAGGTGCCCAAGTCAGTCTGCACCAGTACAGACAGGTGCCCCTCCATTCAGCTCCTTCTCAAGGAATGGCCGAGTGCCGGTGTCAGAAGGGGTTTAGGAGTGAGCAGGACTGAAACAGTCTCTGCCTTCTGAGAGCTTCCAGTGTAAGTCAGGAGACATATACTAAACCTGGAAACAGATATGTAATTGCAAATACTGTAGTGCTGTGAAGGAGGGAAAAACTGGTGCTTTTAGAGAATCAGAGGGAGGCCCTGTTTTCCTTTGGGGGATCGAGGAAAGCCTTTCCAGGGAGGAGGCTCAGGATGAGATATGAAAGAGGAGGAGGCAGCAAGCTGGGTGGAAGAGTCTGCTGGGCTGAGGCACAGCACATGAGAGTGCCCTGTGGCCGGGGAAGAAGGCGCATGGCAGGATAAAGCAGGGTCCTCCTTTCCCTTGCCACCCTGGGTGCTGCTCCTCAGCCCAGGCTCATCTTCAGATGGCCCCATGTGACCCCCGCACAGGGCAACTCAGCCAGGCTGCAGGAAAAAGGAGGCACTGCCTCTTGTGCTCTCAGGCTAGGGTTGGTGCAGTGTTTACCCACGAGGTGTTCTGATTGCTGTGTTCAAGTCAAGAACCACTCCGTGACCTGGGGAAATAGGTTCTGTTTTTTTGTTTTCTGTTTTTTTTTTGTTTTTGTTTTTGTTTTTTTTTGAGACAGAGGCTCCCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCTCGGCTCACTGCAACATCCGCTTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGATTACAGGCATGTGCCACAACGCCTGGCTGATTTTTGTATTTTTAGGAGAGACGGGGTTTCACCAGTTGGCCAGGCTGGTCACGAACTCCTGACCTCAAGTGATCCACCCGCTTCAGCCTCGCAAAGTGCTAGCATTACAGGCATGAGACACCATGCCTGGCCAGGTTCTGTTTTACATGGGTAGTGATCCTTTGGTGCTTCTAGAAGCGTGTTTGCAATGTGCTAAGTATAAGAAGTCTGAAAAATGTGCGTGTACTGCAATACATATATTTTAAAAACTTGATCACATTCTAGACACCATCTCCCAACTTGTTTTCCCTCTCACTCTGTCTTGGACATCTTTCCAGTTCAGCTGTATAATATTCTGTTGTACAGTGTGAAACTTATGGAACCAAATCTCTTTTGCTACTACAAACCACCCTGTGTTTGTGCATGTTAGATAATTTTTTTTTTTTTGAGATAGGGTCTTGCTCTGTTGCCCAGGCTGGACTGGAGTACAGTGGCTTGATCTTAGCTCACTGAAGCCTTGAACTCCCAGGCTCAAGTGATCCTCCTGCCCCACCTCCTGAGTAGCCAGGACTGTAGGCACATGCCACCACACCCAGCTAATTTTTTTTTTTTTTTGAGGTGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCACTGGCGCAATCTTGGCTCACTGCAACCTCCGGGTTCCAGTGATTTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACATGCCACCACACCTGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCTAGGATGGTCACCATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAAGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCGGTGGCACGATCTTGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACACCATTCTCCTGCCTCAGCCTCCTAAGTAGCTGGGACTACAGGTGCCCGACACCACACCCAGCTAATTTTTTGTATTTTCATTAGAGACGAGGTTTCACCGTGTTAGCCAGGGTGTTCTTGATCTCTGGACCTCGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTAAGCCACCGCACCTGGCCCCAACTAATTTTTTTTACAGATGGGGTCTCCTTTTGTTGCCCAGGCTGGTCTTGAACTCCTGGGCTCAAGTGATCCCTCCTGCCTTAGCCTCCTGAAGTGCTGGGATTACAGTGGTGAGCCACTGTGCCTGACCTAGATAAATATTTTTACATGGAAATATGTTTGGAGTTTAAAAGAGGAGTTAGGTTGTATGACCATAATGACACTTTAAAAAAAAAGTATATATCTATTTGCAAATACACATAAAATGTGGGCATGTATACATATACAATGACTACAGCTTTTTAAAAAAATACTGTTTTTAAAATAAAATGTTGTAATTGTTGTTGTTATTATTATTTTTTTGAGACTGAGTCTCATTCTGTCACCCAGGCTGGAGCGCAGTGGCGCGATCTTGGCTCACTGCAATCTCCTCCTCCCAGGCTCAAGCAATTCCTGTGTCAGCCTCCCCAGTAGTTGGGATTACAGGCACCTCCCACTGCGCCTGGCTAATTTTTTTTTTTTTTGAGACGGAGTTTCGCTCTTGTTGCCCAAGCTGGAGTGCAATGGCACGATCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCACCACCACGCCCGGGTAATTTTGTATTTTTTTAGTAGAAACGGAGTTTCTCCATGTTGGTCAGGCTGGTCTCAAACTCCCGACCTCAGGTGATCCGTCTGCCTCAGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCGTGCCCAGCCAATTTTTGTATTTTTAATAGAGGCAAAATTTACCATGTTGGCCGGGCTGGTCTCAAACTCTTGACCTCTAGTGATTCAAAACGTTGTAATTAAAAACAAACAATGCTGGCCAGGTACAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACATGGTGAAACTCCATCTCTAAAAAAATAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGAATGAGGCAGGAGAATGGCGTGAACCCGGGAGTTGGAGCTTGCAGTGAGCAGAGATCGCTCCACTGCACTTCAGCCTGGGCGACAGTGCAAGACTCCATCTCAAAAACAAAAACAAAAACAAAAAACAATGCTTTTGGGGAGTCTTGGGGTCTCCTGGCAGATGGGATGGCGAAAACTTCCACCTTGAGTAACAAGATTATTTCCTGTTCCCTCTTGACAG
Seq C2 exon
GAGGTTGTGCCCAGACATTTCCTTCTTCCAGAGGGCCACTGACTACCCTTGCCTCCTCATCCTGGACCCCCAGAATGAGTTTGAAACCCTTCGTAAGAGAGTGGAACAGACAACACTGAAATCTCAGACGGTGGCCCGGAACCGGAGTGGGGTCACAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107021-TBC1D13:NM_018201:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.148
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(24.8=100)
A:
NA
C2:
PF0056613=RabGAP-TBC=PD(16.5=33.3),PF0056613=RabGAP-TBC=PU(31.9=53.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)