HsaINT0163993 @ hg38
Intron Retention
Gene
ENSG00000107021 | TBC1D13
Description
TBC1 domain family member 13 [Source:HGNC Symbol;Acc:HGNC:25571]
Coordinates
chr9:128792492-128797214:+
Coord C1 exon
chr9:128792492-128792574
Coord A exon
chr9:128792575-128797054
Coord C2 exon
chr9:128797055-128797214
Length
4480 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGC
5' ss Score
7.85
3' ss Seq
TTCCTGTTCCCTCTTGACAGGAG
3' ss Score
10.22
Exon sequences
Seq C1 exon
CCACTCAACCCCAACCCTGACAGCCGGTGGAACACGTACTTCAAGGACAACGAGGTGCTGCTGCAGATCGACAAAGATGTCCG
Seq A exon
GTAGGCAGGGTGCCTGGGGCCGGGAGCTGGCCCATGGGACTTCTGGGGCTCTCTGCAGCTCTGTCTTTTCCATTTGCAGGCCGGGCCTATGGGTGAGTGTTTGCGGAGCTGCTGGTGGATTGTCCCAGCGGTTGGGTCCAGGCACTATTGATGATAGGCTGAGAACGAGGCTAGCGAGGGAGATTCTGTGCTTGCATGTACCTGGCTGTTCTTATCTGAGCTGTAGTTTCATTTGTACCCCAGGTGTTTATGGATTCATCTGACATTCATTCAACAAGTATTGAGCCCCTTTTGTGTGCCAGGCTTAGCACTAAGTTCAGGGTTGAGCACTGGTGTGTTCCCTCTCCTTAAGGATCTTAGAACCTAGAAGGGAGGATGGCAAGACAGACATTCAGCCCATTAGATCTTAGCAGATGGCATTCGTGGTAAATGCTCCTGAAGGAAAATTTGAGGGGGTTTGGGGAAACCTCACCTGAGAAGCAGTGATTCAGCTGAGATCTGAGGAGTGGGAGGCCTCAGGGGAAGAGTGCAGCAAAGGCCATGTTGGGCAGGGAACTGCCCTTGGCAAGGTCCAGAGAGCCCGCAGAGCTTGGCACATCTGAGGAACAATGCCAAGGCCAGGGTGGGAGATAGGGGCTGGACCTTGGACTTGATTCTAAGAGCATGAGGCAGCCATGCAAAGGTTTTGAGTAAAGGAGTGACAGGGTCAAATACACAGTTTTTAAAATCTTGAGCTACAATGTGTTTGTGCTTTTCCACTTGGTAAAGAAATGTGGAGATGCTGGCTGTGCGGCCCTGTCGGGCTGGGGAGTTTGGCAGCGTGTTGGGCTAGGTGAGGAGCTAGAAGGCAGGCCTTGTCCACAGGTGGGTGGAGTGGCCAAGGGCTTGGGTTCTGGAGTCCATTTGCCTGGTTTCCATTCCGCATTTACCAGTTGTTAGCTGTGTGACCTTGGGCAAGTGACTCACACCTTCTGATCATTACTCTATTGTGAAGTAGGAGTAAGGTGGTTCAGGCTAAGGGCACAGAACGGGCTGGGTCTCCACAGATACGTGGGACTTAGCACTTACAGAGGCCCTTAGAATGATCAGATCTCCATCAGAGAAGGGTCCTGGGAGCTTATCCTGTTCCTTTTACAACAGCCTGCCTGGGACCCCCGGCACTTGGTTAGACAGAACAAGCTGGCACTCTGACCCGCAGTGACCCTTCAGAATCTCCAAGGGGCAGCTCTCAGGTGCCCAAGTCAGTCTGCACCAGTACAGACAGGTGCCCCTCCATTCAGCTCCTTCTCAAGGAATGGCCGAGTGCCGGTGTCAGAAGGGGTTTAGGAGTGAGCAGGACTGAAACAGTCTCTGCCTTCTGAGAGCTTCCAGTGTAAGTCAGGAGACATATACTAAACCTGGAAACAGATATGTAATTGCAAATACTGTAGTGCTGTGAAGGAGGGAAAAACTGGTGCTTTTAGAGAATCAGAGGGAGGCCCTGTTTTCCTTTGGGGGATCGAGGAAAGCCTTTCCAGGGAGGAGGCTCAGGATGAGATATGAAAGAGGAGGAGGCAGCAAGCTGGGTGGAAGAGTCTGCTGGGCTGAGGCACAGCACATGAGAGTGCCCTGTGGCCGGGGAAGAAGGCGCATGGCAGGATAAAGCAGGGTCCTCCTTTCCCTTGCCACCCTGGGTGCTGCTCCTCAGCCCAGGCTCATCTTCAGATGGCCCCATGTGACCCCCGCACAGGGCAACTCAGCCAGGCTGCAGGAAAAAGGAGGCACTGCCTCTTGTGCTCTCAGGCTAGGGTTGGTGCAGTGTTTACCCACGAGGTGTTCTGATTGCTGTGTTCAAGTCAAGAACCACTCCGTGACCTGGGGAAATAGGTTCTGTTTTTTTGTTTTCTGTTTTTTTTTTGTTTTTGTTTTTGTTTTTTTTTGAGACAGAGGCTCCCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCAATCTCGGCTCACTGCAACATCCGCTTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCTAGTAGCTGGGATTACAGGCATGTGCCACAACGCCTGGCTGATTTTTGTATTTTTAGGAGAGACGGGGTTTCACCAGTTGGCCAGGCTGGTCACGAACTCCTGACCTCAAGTGATCCACCCGCTTCAGCCTCGCAAAGTGCTAGCATTACAGGCATGAGACACCATGCCTGGCCAGGTTCTGTTTTACATGGGTAGTGATCCTTTGGTGCTTCTAGAAGCGTGTTTGCAATGTGCTAAGTATAAGAAGTCTGAAAAATGTGCGTGTACTGCAATACATATATTTTAAAAACTTGATCACATTCTAGACACCATCTCCCAACTTGTTTTCCCTCTCACTCTGTCTTGGACATCTTTCCAGTTCAGCTGTATAATATTCTGTTGTACAGTGTGAAACTTATGGAACCAAATCTCTTTTGCTACTACAAACCACCCTGTGTTTGTGCATGTTAGATAATTTTTTTTTTTTTGAGATAGGGTCTTGCTCTGTTGCCCAGGCTGGACTGGAGTACAGTGGCTTGATCTTAGCTCACTGAAGCCTTGAACTCCCAGGCTCAAGTGATCCTCCTGCCCCACCTCCTGAGTAGCCAGGACTGTAGGCACATGCCACCACACCCAGCTAATTTTTTTTTTTTTTTGAGGTGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCACTGGCGCAATCTTGGCTCACTGCAACCTCCGGGTTCCAGTGATTTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACATGCCACCACACCTGGCTAATTTTTTGTATTTTTAGTAGAGATGGGGTTTCACCGTGTTAGCTAGGATGGTCACCATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAAGGAGTCTCACTCTGTCACCCAGGCTGGAGTGCGGTGGCACGATCTTGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACACCATTCTCCTGCCTCAGCCTCCTAAGTAGCTGGGACTACAGGTGCCCGACACCACACCCAGCTAATTTTTTGTATTTTCATTAGAGACGAGGTTTCACCGTGTTAGCCAGGGTGTTCTTGATCTCTGGACCTCGTGATCCGCCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTAAGCCACCGCACCTGGCCCCAACTAATTTTTTTTACAGATGGGGTCTCCTTTTGTTGCCCAGGCTGGTCTTGAACTCCTGGGCTCAAGTGATCCCTCCTGCCTTAGCCTCCTGAAGTGCTGGGATTACAGTGGTGAGCCACTGTGCCTGACCTAGATAAATATTTTTACATGGAAATATGTTTGGAGTTTAAAAGAGGAGTTAGGTTGTATGACCATAATGACACTTTAAAAAAAAAGTATATATCTATTTGCAAATACACATAAAATGTGGGCATGTATACATATACAATGACTACAGCTTTTTAAAAAAATACTGTTTTTAAAATAAAATGTTGTAATTGTTGTTGTTATTATTATTTTTTTGAGACTGAGTCTCATTCTGTCACCCAGGCTGGAGCGCAGTGGCGCGATCTTGGCTCACTGCAATCTCCTCCTCCCAGGCTCAAGCAATTCCTGTGTCAGCCTCCCCAGTAGTTGGGATTACAGGCACCTCCCACTGCGCCTGGCTAATTTTTTTTTTTTTTGAGACGGAGTTTCGCTCTTGTTGCCCAAGCTGGAGTGCAATGGCACGATCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTCAAGCGATTCTTCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCATGCACCACCACGCCCGGGTAATTTTGTATTTTTTTAGTAGAAACGGAGTTTCTCCATGTTGGTCAGGCTGGTCTCAAACTCCCGACCTCAGGTGATCCGTCTGCCTCAGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCGTGCCCAGCCAATTTTTGTATTTTTAATAGAGGCAAAATTTACCATGTTGGCCGGGCTGGTCTCAAACTCTTGACCTCTAGTGATTCAAAACGTTGTAATTAAAAACAAACAATGCTGGCCAGGTACAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGTGGGTGGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACATGGTGAAACTCCATCTCTAAAAAAATAAAAAATTAGCCGGGCGTGGTGGTGGGCGCCTGTAGTCCCAGCTACTTGGGAGAATGAGGCAGGAGAATGGCGTGAACCCGGGAGTTGGAGCTTGCAGTGAGCAGAGATCGCTCCACTGCACTTCAGCCTGGGCGACAGTGCAAGACTCCATCTCAAAAACAAAAACAAAAACAAAAAACAATGCTTTTGGGGAGTCTTGGGGTCTCCTGGCAGATGGGATGGCGAAAACTTCCACCTTGAGTAACAAGATTATTTCCTGTTCCCTCTTGACAG
Seq C2 exon
GAGGTTGTGCCCAGACATTTCCTTCTTCCAGAGGGCCACTGACTACCCTTGCCTCCTCATCCTGGACCCCCAGAATGAGTTTGAAACCCTTCGTAAGAGAGTGGAACAGACAACACTGAAATCTCAGACGGTGGCCCGGAACCGGAGTGGGGTCACAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107021:ENST00000223865:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.107 A=NA C2=0.198
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0056613=RabGAP-TBC=PU(31.9=53.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains