HsaINT0165591 @ hg19
Intron Retention
Gene
ENSG00000109927 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:11720]
Coordinates
chr11:120976540-120980207:+
Coord C1 exon
chr11:120976540-120976673
Coord A exon
chr11:120976674-120979919
Coord C2 exon
chr11:120979920-120980207
Length
3246 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
AACCTCTCTTATTTTCGTAGGTC
3' ss Score
8.43
Exon sequences
Seq C1 exon
CTCAGCCCAGGGAGCTCATGTATCCATTTTGGCAGAATGACACCAAAACCCCTAAAGTAGATGATGGAAGCTCATCTGAGATTAAGTTGGCCATCCCAGTTTTCTTCTTTGGCGTTCCTTACCGCACTGTCTAT
Seq A exon
GTAAGTGGAGAAGCAGCCCATCTGTTGTTCTCTGGCCCTCCCTTTTGTTTGTCATTAAGAAAAGCATTTTAAGTATCCTCTTCCAGAGCTCTGGGAAGGGAGGATTTATTGGCAGCCAAAACGACAAGTTCTGAGATTTCATGAGCTGATAGGTTTTATGAATAAGAAAGTCAAAGGTATATTTAATGGCTAATGTTCATAGTGGAGGAGTATACAGGGCAATAAATTGCTTTTGTCAGTGATTAAACATAGAAGTGAAGCAGAAGCCCCAATGCCATGAATGTTATTTCTGCTACTCAACGAGATAAAAAGATACAATGAACCACAGTAGGAGCAATATCATTTTTCTTTCCCTTCTGGGGGTGTGAAAAGTTTAGGCATCTGCTGTTCTTGGGCTTCCTACCAATTTGAAGCAGAGTCGGAACACAGTAGGGGGGTAATCAACTATTATATCAAAGTTGTTTGCAGAATTGGCCACCCTCAATATGGGTCTGTAGATAGGCCAGAGGGTCTCATCGCCCAACCCACACTAAGAAATGGTCCCATTTGTGATCAGAGCTCTCCTAGGCACCTGTGTTCTCAGGTTTTTGTTTTTGGTTTTTTGGATCATTGGGTTTGCTGCTAGCGAAACTGTGGCACATGAAGAGGAAGATTCAGAGCAGCCGAGCCTGGCTTTATTGTTGGCCTTAAAGAACTGGGTGAGGGATTATACCACACCCCTGGAGGAAGAATGCAACCCTAAGCATGTCCACCTCTGGCCATCTCTACGTCTGGGACCTCTCTCTTCCCCAACTTTTGATTTATGGCTCCGGGATGATTCCCGCTAGAAAAGAGTTCACTATTCCATTACCTAACGGTGGTCCCTGAACCTGCAGAAGCAGCGTCACACAGGCACTCATTAGCAATGTCATTTCTCAGGTCCCACCCCACACCTACTGAGTCAGAAACTCTGGGAGGAGGAGCCAGTAATCTGTGTTTTAATGAGTCCTCCAAGTGGTTCTGATGCCCACAAAAGTTTGAGAACCACTGATCTCAACCATAGGATATAATCAAGACACACGTGAGTCATCACCAGCTTCCTCTGCCAGTCTGTGTGTTTTAATTACACCTGTTGTTCCCTAGCAAACACTTCATTCTGACATCCTGAAACGCCTTTTATACTCTATTCACGGCAGGGCCTCCCTAGTCTGTCTTTGTAATAGCTGGTTTTAAGTTTTGGGTTGTGTTGACCTGATTTTGGCAATAAGGCAGTGAGGACTTCCGTGCTGGAAGCCCAGTTAAGCTAGTTTTTCTTCTCTATTGCACTGTGTGATATGGAGTCTGAAGAATTTTTTCTTGCCCTTGCAACAGGAGGTTCCTTAGCTTGAGGCAGATTTATTTGAGGGTAAATTGTTCCTTGCGTTTCCAACACTTTGAGTAGTGCAGTTTTCTTCAAGCCTCTAGGATGTTCCCAATTACTGGAAGACAATAGGCTCTTAATGTCTCTTCCAAACCCAAAGCCTTGCTTCCAAACACGTAGACCTACCCTTGGTCCAGGCCTTGATAACTTGCCTCTGGGATCTGGGCCACTGTTAATGTCCATAATGTTACTGGTTAACAGAAACTTAACATATGATTGGAATGTATAGGAAAATTATCTCCAGGTTTTCTATATCCAAGAATTGCAGTTCCCATTACAGGTACCTCTGCTGCTGAAGCCGTGTCAGCCACAGGGTTAAATCAGTTTATCTACCAACGTACAGAGCTGCAGATTCACGCAGAGGCTGAATTGTTTACAGGTCCCTTGTAAACTGAGGGTATATCTTGGCTTGTGATTTCCAGTAAGGTTTCCTATTTAATTGGTTTACTAAGCCATTTACAAATCATGAAGAAATCACCATAAGATAGTCATTTACATAAACAGTGTAAAGTAGTCATGCCTCCATTTTTATGCAGCGATTGTACCAGGACACTATCACACCACATGAGCTGGAATGGAACTGGGCATCTGTAGGTCTTAACCTTGTCCTTGCTCTGAGTGCAGGAGTGGTTGTGACATCAGTGGAGGTCTTTTAAATGTCTCACCCAAAGCAGAATATTTTCATCAGAGACTGGAGTTGGATGAAGGAGTATTTGATTTATCTTTCTCTGACACTCCTCTTTTGTCATAAAATAGGAAGCAAGCCCTAACATAGGGCACCTCAATTTTCAAATTTAACTTTACTTCCATGCTTATTTATTTTTCCTGCTTATTTTGTATTAGTGACCCTGAATCTGTCTTTAGTACCCATGTTACTCCCTGTCTGGCCCAGCACATACACGCATGCCACCCCCAGTACACACATACACACACACACCACTCCCAGTACACACACATCACACCTCAATATACATACACACACACCACCCTCAGTACACACACATGTACACACCAACCCCAGTATACACACACATACACACCATGCCCAGTACACAAACATATACATCCCACCTCAGTAAGCACACACACCCCACCCCTAGTACATACACATATACACACCCACTCCAGTATGCACACACTGCCCACCCCAGTACACACACACTCCAATATACACACACACATACACACCACCCCCAGTACACACACACACACACATCCCAGTATACACACACACCACATCCCCCGTATACACACACACTCCCCACCCCAGAATACACACACAAAGCCCACTCCAGTACACACACATGCTCCAGTATACACACACACCTCACCCCAATACACACACACATACCCCCACTCCAGTACACACACACTTACACACCTCACCCCAGTACACACACACACACCATCACCAGAACACACACACCCATACTCCTCACCTCAGTACACAAACACACACTCACGCACCTCACCCCAGTACACACACACCCTTCAGTACACACACATGCACATCTCACCTGTAGTACACACATACACACACACAGAAGCACAACTCAGGAGCATTTGATAAGTGTAATAGAGACAGGATAGGGAACATGAAAATGAGACTGATTATTAATCAGAAATGAAGCTGGTTACAAATCTAATGTGAAAGAAAACCAATGAGTTTGTCTGGAAGTAAACGAACCTCTTAGTCTGAGCAATGGAACCCGGTGTTTGGGGGTTCTAATTCAGTAGTTTAAAAGTTGTTTTCATTCATACAGTTAGGCGAATGTCTGTCTTGGTTTGTGACTCTGAAGTTGTTATGGTTTCAGATCCACTGTGCAAAACCTCTCTTATTTTCGTAG
Seq C2 exon
GTCAATAACAACGGAGTTGTTTCCTTCAATGTGCTAGTGAGCCAGTTCACGCCAGAATCCTTTCCCCTGACAGATGGGAGAGCCTTCGTCGCCCCATTTTGGGCAGATGTGCACAATGGAATTCGAGGCGAGATCTATTACAGAGAGACCATGGAGCCTGCCATCTTGAAAAGAGCCACCAAGGACATCAGGAAGTACTTCAAAGACATGGCAACCTTCTCTGCCACTTGGGTTTTCATTGTGACATGGGAGGAAGTCACGTTTTATGGAGGCAGCAGCACCACACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109927-TECTA:NM_005422:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)