GgaINT0138311 @ galGal4
Intron Retention
Gene
ENSGALG00000006614 | TECTA
Description
tectorin alpha [Source:HGNC Symbol;Acc:HGNC:11720]
Coordinates
chr24:3549177-3550552:-
Coord C1 exon
chr24:3550419-3550552
Coord A exon
chr24:3549465-3550418
Coord C2 exon
chr24:3549177-3549464
Length
954 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
GAACCCATCTTCTTGAGCAGGTG
3' ss Score
5.3
Exon sequences
Seq C1 exon
CTCACGCCATGGCAAGTCTGTACCCATTTTGGCCAAACGACACAAAAACTCCCAAAGTGGATGATGGGAGCTCTCCTGAGATCAAGCTCTCTGTTCCGTTCATCTTCTTTGGAGCCCCATACAGGACGGTTTAT
Seq A exon
GTAAGTGGAGAACAGACTTTCCTTTTATTCTTTTCTTTGCCATTTGGCTGCACGCTGAACGCGCTCTCGCTGTCGTCAAGAGTGGGAAGATTTATTAGCACCCACCTGACAAGTTCTTAGATTTCATGAACTGATAGGTTTTATGATTAAGAAAGTCAAAGGTATAGTTAATGGGCTAATGTTCATGGGGAAGGAATATAAAAGGCAATAAATTTTTTTTGTAGGTGATTAAATGGTACAGCGGAGCTCAGGGCTTGACATAAGGAACATTATTCCTGTTCCATGACAAGAAACGAGAACATGCAGAGACCCATAGGAAAAAAAAAGGGGTGGTTTGGAGCTTTGTGGAGGTGCCTAAGCCAAGGGTGGGATGCTGCCGTGCTCAAATGGTAGAGCAGTGACAACTGGCATTGGGAGGGCTCCTGGAGTGGGCTGTCAGGAGTGTGCACCTCTCTGTGTGTCCATAAGTGCATCCTAGGGTCACGGAATGGCTTGAGTTGGAAGGGACCCTAAAGACCACCTAGCTCTGAGCCCTGCTAGAGCCCCGTAAGTCTCACTAAATAAGGTTGCCCAAAGCCCCATCCAACCTGGCTGTTGACTGGGACACACACTGCCCATGCTGTGAAATAATAATCCATTTCCCTGCAGCTACCCAGCTGCACAGCCAGTTCTCAAAGGCTGGGTGCACCCAGGGACCAGAGGCAGGTCCCAGCTGAGCTGGGTGCCAGCCTGCATGGCATCCTGATGGGTTCTCCATTGGTCTGTAGGAGCCTGGTTGTGCACATTTCCCAGGGTTTTGTCCTGCCTGGGGCTTTATGAGTCCATTTGGCCAGGAGTGCTCATGAGCTGCCATCATTACAAACCATCCACTGTCACAAAACACTCATCCCACATTTTGTGATGAGTCAGCAGCTTGCTTAGGGCTCTCTCCATTGAACCCATCTTCTTGAGCAG
Seq C2 exon
GTGAACAACAACGGTGTGATCTCCTTCAACTCGCTGGTCAGCCAGTTCACACCTGAAGCCTTCCCACTGGCCGATGGCCGGGCCTTCGTTGCGCCCTTCTGGGCCGACGTGCACAATGGCATCCGTGGGGAGATCTACTACCGCGAGAGCACCAACCCTGAGCTGCTGGGCAGAGCCTCCAAGGACATCCGCAAGTACTTCAAGGACATGGCGTCCTTCTCTGCCAGCTGGGTCTTCATCGTCACCTGGGAGGAGGTGACGTTCTACGGGGGGAGCAGCACGACACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006614:ENSGALT00000040861:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATTTTGGCCAAACGACAC
R:
GTGACGATGAAGACCCAGCTG
Band lengths:
357-1311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]