HsaINT0166123 @ hg19
Intron Retention
Gene
ENSG00000198176 | TFDP1
Description
transcription factor Dp-1 [Source:HGNC Symbol;Acc:11749]
Coordinates
chr13:114285938-114287600:+
Coord C1 exon
chr13:114285938-114286059
Coord A exon
chr13:114286060-114287434
Coord C2 exon
chr13:114287435-114287600
Length
1375 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
TTTTCCTTTGTATTTTGAAGGAA
3' ss Score
9.77
Exon sequences
Seq C1 exon
GTAATTGGTACGCCTCAGAGACCGGCAGCGTCAAACACCCTGGTGGTAGGAAGCCCACACACCCCCAGCACTCACTTTGCCTCTCAGAACCAGCCTTCCGACTCCTCACCTTGGTCTGCCGG
Seq A exon
GTGAGCACTTCCCTCTGGACCCTTAGAGTTGTAGGACTGCTTGCGGTTCGCACCTCCACGTTCTCCTGGGCCACGTGTGTCACACAGTCGTGCGATGGGGCTCCCACGCGCGTTGACGCCAGCCTCCGAATCACACTCACCCATCATCGTGGCCTGCACAGGTGTGCAGCCGAGGCGCACTGCCTCGGTCATGGAGAAGTCGGGCTGGGCACCGCCCACCCCGCTTTGTGTCTGGTGTAGTGGGTGCTCTCTGAAGGGCTGGCAGCTCTTGGCCAAGACGGGGAGAAGCTGGCCTCGTACTCGCCACAGGACCTCGGAGACTTTCCCTCGTCTGTGCTGGGAGCATGTGGGATGGATTTCACCCACTGCCCCTGAATTCAGCCTCTACTGCCCCTGGGGTTACGGCCCCCGCGGGTGGTCCCGCCAGAGCTGCTCCTTCCACTAAAGCAAGATCTGATGAGCTGTGTCTTTCCTTAAAAACACACACACGCAAAGCTGCAAAAGCCTGCCTGTGTTGGTGCCCAAAGCTTCACCAGCTAGGAACCTCAGGTGGCCTTTCCCGCCATGTGGGGACTGACCAGAGTGTACAGAGTTGGGCTTTCCCTCGACCTGAAGCACACTTAGTGCTTTGCACCTGTTGTCAAGCGGCTGTCACAGCCCAAGCTGTATGAAATTACAGCCTGCTGAAATTAGTCCTAAGAATTCCCAAATTTACACTGAAACGTCCCATAGTTCCTGATTCTGGCTGCCCTCTTTAGAAAAGTGGTGCTTGGGGCTCACGCCTGTAATCCTAGAGGCCGAGGCCAGCAGATCACGAGTTCAAGAGATTGAGACCATCCTGGCCAACGTGGTGCAACCCCGTCTCTATTAAAAATACAAAAAAATTAGCCAGATGTGGTGGCACGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCCGAGATGGCGCCACCGCACTCCAGCCCACGACAGAGCGAGACTCCGTCTCAAAAAAGAAAAAACAACAACAAAAAGAAAAGTGGTGCTTGGTGTACCGGCACATCTCCCATATGCTGATTTGGGTCCTGGGGACGCCTCCCGTTTTCCCTGACGCTTGGAAGGTTAGAGGTGCAGCCTGCTGGGGAGACACTCGCTTTCTGACCTGCAGGACCACTGGGCCTGGGGGCTGGGGCTAGGGGGTCCTGGCCTGCTCACGTGTTGGATCTGCTGCGCCCGTGGGACGTGGCCCCTTTTTGTGCAGCTCATTAGAGCTCTCAGGTAAAAGCATTCCTCGATTCAGGCTGATCCTCAGGAGGGCTGACAGTCGCTTCTCTTTTCCTTTGTATTTTGAAG
Seq C2 exon
GAAGCGCAACAGGAAAGGAGAGAAGAATGGCAAGGGCCTACGGCATTTCTCCATGAAGGTCTGCGAGAAGGTGCAGAGGAAAGGGACCACTTCCTACAACGAAGTGGCAGACGAGCTGGTTGCGGAGTTCAGTGCTGCCGACAACCACATCTTACCAAACGAGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198176-TFDP1:NM_007111:5
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.909 A=NA C2=0.386
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0231915=E2F_TDP=PU(56.6=83.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGGTACGCCTCAGAGACC
R:
TGACTCGTTTGGTAAGATGTGGT
Band lengths:
286-1661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)