DreINT0162309 @ danRer10
Intron Retention
Gene
ENSDARG00000019293 | tfdp1a
Description
transcription factor Dp-1, a [Source:ZFIN;Acc:ZDB-GENE-040426-2883]
Coordinates
chr9:35150265-35153300:+
Coord C1 exon
chr9:35150265-35150386
Coord A exon
chr9:35150387-35153134
Coord C2 exon
chr9:35153135-35153300
Length
2748 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TTGGATCTGTTGTTCTTCAGAAA
3' ss Score
7.74
Exon sequences
Seq C1 exon
GTTATTAGCACACCTCAGAGGCCCAGCGGCTCCAATGTGATCCTCATGAACAGCCCACACACACCAAGCTCTCAGTTTATTACCCAGAGTCAACCGTCAGAAGCCTCTCCTTGGTCTTCAGG
Seq A exon
GTAAGTCATTCCTCAGCTGGTTATTATATAACCTTTTGTGGAGCCAGGTGTTTTACTGAATGTTTCGGATTTTCCTGTTGTCGCTCTGCGTTTGAATACTGCTGGAGAAATCCGTAACATTAATGATGATTTTTATATATTATATTTTCATTTCACTTTGCATTTGATACCATAAATGTGACCCTGTACTACAAAACTTACAATAGCAGAAAATGCATTGTGTGAGTCAAAATGATTTCATATTGAGATAAAATGAGATCATATTTCATGAAGTTTTTTTTAGGGTTGTACTATTTGGTGAAAATATGTAATTGCAATTTTTTTACACAGATATTGCTATTTTTGATTTGATTAGCTTTTTAATTTTGTAGTCAAGCTTCACCTTAATATTCTGTATTGTAGCTTCTTACTACTAAAATGCTGTGAGTGTTAGTTAAAAAAGGAACTGAAATATGAACAAACTCCAACTTCTATTCAAATTTATTTATAAATATTTAGAAATAAGACACACGGTTTTAGCAGTAAGTTATGGCATTAGTTATCTCCTGGTGGTTTTGTAATGTTTTTTTTCATATGGTGAAACAGCTGCAAACAACTTAGAAATTGTACTTTGCTTTTGATAGCTACTAGATTCATTGTCACTAGCAATACCCTGTTAACTTTTTTTGCGAGACACTCCTCATATAGCCACCTGTGATGCTTTTTTAGGTGCCTTTTTGTTGTATTTCCTCGTTCTGTGGCTGCTCTAACAAATGACCTGTTTTTGTTCGGTGTCCCTGACTTTGAAACCAATATCATCCCATGTTACCAATATGAATTAATCTATTAATACTTCTGAAGCATCATCCCACTGTTCCACGTTTTCCTGTTTGTTTGTTTTATTATGGGCTTCCACAGTTCAGTCGCATAATTCTGATTGGTCAGAACACAAGCGTGCTCACTTAATTGTATCATAAGACTGTAACACACAGACAGCAGTCACACATTTGCTCTGGGTGGGTGTTACGAATTCCAATCTTGCTTGGCTCCACACAGCAAGCCAAACCCGTAACAATAAATAATATTAAATAAAAATAATTAGAACTCTTCTAAATTAATTAGGAGCCTGCAGTCTCATCTCCAGTTCAAAAGTAAAAACAACAACAAAGACAAATGACCAAGGAAATAACATATAGTCAAATTTATTTGATGTTCAACTTCAAAAAGGAGACAATAAAAAGCTTGCGGAGGTTAATGCCAAAAAAAAAAACTGAACAGCTAACTAAGTTTTTAACCCTCTTACCTGCACATGAAATAAGACAAATAAAATAACATTCTCTTACTTCCTTACTAACCACAAAATATGAGGAAAATGTAATAAAACAAAAAGGCACCCTCCTCAGCACACGTGTCTCCGCATAGATCTCAGAGTCAACAATCAGCATTCACTTTCAACTATTTATCCGAGTAAAATACAAAGTTTCTACTTCACAACACAAGGCGAGAGAGAGGAGACTCTCCGAACGACATTCCAGTCCGGTTTAAATGGTCCTCACCAACTAGCCGGCCTCCACATGCTGGCACCTGCTTCACAACACCTGTGCGGTAATAATGAAACCTATTCGGAGAAAGAGGCGGAGAGAAAACACACAATTACAAACAAAAAAACACTACTTGGGATATTTATTTATATTATTATTATTTCTATAGTATTATTTAATTTTTTTAAGAAAATACGTAACAGTGGGGGAAATTCTATTGATACATTTAATTTCAATTTCATATCTCAGCCTCTCGAGGCGGTGGGGCAGTAGTTAGTGCTGTTACCTCACAGCAAGAAGGTCGCTGGGTCGCTGGTTCGAACTTCGGCTCAGTTGGCGTTTCTGTGTGGAGTTTGCATGTTCTCCCTGCCTTCGCGTGGGTTTCCTCTGGGTGCTCCGGTTTCCCCCACAGTCCGAACACATGCGGTACAGGTGAATTGGGTAGGCTAAATTGTCCGTAGTGTATGAGTGTGTGTGTGTGGATGTTTCCCAGAGATGGGTTGTGGCTGGAAGGGCATCCGTTGCGTAAAAACTTGCTGGATAAGTTGGCGGTTCATTCCGCTGTGGCGACCCCGGATTAATAAAGGGACTAAGCTGACAAGAAAATGATTGAATGAATCTCAGCCTGTTGCGATTTAGTTGATTCCAACGTTCTAAATCGTGGTTTGATTTCGATTATTCGCACAGCTGTAAGTGTTTTAAATTTAGTAAATTTCTCATTGTAAATATATCAAATACAAAACTAAGTTTAGTAATATGCATTGCTGACCTCATTATTTAGACAAGATTTTTCACAGTATTTAGATTTTCTTTGAACTGTTGGTTTTCATAATTTCAAATAGCTTTATGTCAGCGAAATATTGCCCTATCCTAACAAACCAAACATCAATGGAAAGCAATTTTTAGACAACTTTCTGGTGAGGTTTCAAAAATGTTAATGATAATTAATGTTAATAATTGACAGTTATGACTGGTTTTGTGATCTAGTGCCAGTTTGTATTTTGTGAATTACCACTAAAGTTAATAATGATTTTGCTAATGGAGTCGTCGAGTTATGACATACTTTCATATATTTTTTTTAAGGCAGAATATTTTTACTTCACCTTGTACATTGTATAAGTACTTTGGATTTTTTTTTAAAATAAACTCTTGCTTTGCTCTCTTTTCTCTATCAGCAGTTATAATTAAAAAATATCAATAATTTGCTGTTGGATCTGTTGTTCTTCAG
Seq C2 exon
AAAAAGGGGTAAGAAGGGGGAGAAGAATGGGAAAGGCCTCAGACATTTTTCCATGAAGGTTTGCGAGAAGGTCCAGCGGAAGGGTGTCACAACTTACAACGAGGTTGCTGATGAGCTTGTGGCCGAGTTCAGCTCTGGTGATAATCATATCTCTCCTAATGATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019293:ENSDART00000077800:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.976 A=NA C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0231915=E2F_TDP=PU(56.0=83.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]