RnoINT0150093 @ rn6
Intron Retention
Gene
ENSRNOG00000019222 | Tfdp1
Description
transcription factor Dp-1 [Source:RGD Symbol;Acc:1560344]
Coordinates
chr16:81118882-81120219:+
Coord C1 exon
chr16:81118882-81119003
Coord A exon
chr16:81119004-81119909
Coord C2 exon
chr16:81119910-81120219
Length
906 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
CATTTTCTGCTGTTTGGAAGGAA
3' ss Score
4.52
Exon sequences
Seq C1 exon
GTGATTGGCACGCCTCAGAGACCTGCAGCAGCCAACACTATTGTGGTAGGAAGCCCACACACTCCCAACACTCACTTTGTGTCCCAGAACCAGACGTCTGACTCCTCACCTTGGTCTGCTGG
Seq A exon
GTGAGCACCCCCACCCTGGGGGGCAGCCGCTGAGAATGTCCCCTTTTCCGCTGGCCATGTGTCACTTGGTCTGTAGTGGGGTACTTGAGCAGAGAGGATTAAAAGCTCCCATCTCACCTCTGACTGGGCCACAAAGAACACCGGCCGCTAATATGACACAGACACTTAGAAAGTGTCAGAAGATCTGACCTCTACCAGGTCCCACATCAGGGCTCCATCCTGTGCGTGGTCTGTCCCTCCAGGGCTGTACTGCCACTGGGACAGTAGCGGATGTGGAAGTGAAGTGATTCTCTTTAAAGGTCAACAGTGTATCACTTTTTAAAAACACTGTTGTGACCATGTCTCTCTCCCTTCAGTTTAGAATCACCTGTGCCCAAGCTCTCCTGAGGGACCTAGTGACTGTTCCTGGTGTGATTTAGTGAGGGGACACATTTGCTGTGCCTCCTGACCTGAAACCTGCACCATGGTTTCCTTTTGACACAAGCCCATCAGTCAGTCTGAGCATTTGCCTTATGTTATGGTAGCTTACCAAAATCAGCCCTGAAAATTCCTAAGTTTACACTAAATGTGCCCTGCTCTGATGCCAGCAGACGCCTTTAGAACAGTGGTGCCTAGTGTGTGGTCCGGATCAGACCCATGCTGATTTCTGCCCTTCGGATGTCTGTCCGTCTTCCCAGACATTTAAAGGCACAGGTGTGTGAACTGGCCTCGTACCTGTTCTTTTCTGACCTGACAAACACTTGATACTTGCCAATGTCCTTGATATATTAGGGCGGAGTCCCTGCTGCCTATGGTGGGGCTGTGGGAACAGTGGGCCTCTGGGGCCTTAGGCCTTTCCTCTGGAAGTGTCTGGATTCACAGTCGGCTCCCAGGCTCTAACAGTGTCCATTTTCTGCTGTTTGGAAG
Seq C2 exon
GAAGCGGAACAGGAAAGGTGAGAAGAATGGCAAAGGCCTGCGGCATTTCTCCATGAAGGTGTGTGAGAAGGTGCAGAGGAAAGGGACGACCTCCTACAATGAGGTGGCCGACGAGCTGGTTGCCGAGTTCAGCGCCGCTGACAACCACATCTTACCCAACGAGTCCGCCTACGACCAGAAGAACATCCGGCGGCGTGTGTACGATGCCTTAAATGTGCTGATGGCCATGAACATCATCTCCAAGGAGAAGAAGGAGATCAAGTGGATCGGCCTGCCCACCAACTCTGCTCAGGAGTGCCAGAACTTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019222:ENSRNOT00000026150:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.486 A=NA C2=0.147
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0231915=E2F_TDP=WD(100=84.9),PF087815=DP=PU(4.1=7.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACACACTCCCAACACTCAC
R:
CAGGCCGATCCACTTGATCTC
Band lengths:
342-1248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]