HsaINT1044090 @ hg38
Intron Retention
Gene
ENSG00000198176 | TFDP1
Description
transcription factor Dp-1 [Source:HGNC Symbol;Acc:HGNC:11749]
Coordinates
chr13:113631623-113633285:+
Coord C1 exon
chr13:113631623-113631744
Coord A exon
chr13:113631745-113633119
Coord C2 exon
chr13:113633120-113633285
Length
1375 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
TTTTCCTTTGTATTTTGAAGGAA
3' ss Score
9.77
Exon sequences
Seq C1 exon
GTAATTGGTACGCCTCAGAGACCGGCAGCGTCAAACACCCTGGTGGTAGGAAGCCCACACACCCCCAGCACTCACTTTGCCTCTCAGAACCAGCCTTCCGACTCCTCACCTTGGTCTGCCGG
Seq A exon
GTGAGCACTTCCCTCTGGACCCTTAGAGTTGTAGGACTGCTTGCGGTTCGCACCTCCACGTTCTCCTGGGCCACGTGTGTCACACAGTCGTGCGATGGGGCTCCCACGCGCGTTGACGCCAGCCTCCGAATCACACTCACCCATCATCGTGGCCTGCACAGGTGTGCAGCCGAGGCGCACTGCCTCGGTCATGGAGAAGTCGGGCTGGGCACCGCCCACCCCGCTTTGTGTCTGGTGTAGTGGGTGCTCTCTGAAGGGCTGGCAGCTCTTGGCCAAGACGGGGAGAAGCTGGCCTCGTACTCGCCACAGGACCTCGGAGACTTTCCCTCGTCTGTGCTGGGAGCATGTGGGATGGATTTCACCCACTGCCCCTGAATTCAGCCTCTACTGCCCCTGGGGTTACGGCCCCCGCGGGTGGTCCCGCCAGAGCTGCTCCTTCCACTAAAGCAAGATCTGATGAGCTGTGTCTTTCCTTAAAAACACACACACGCAAAGCTGCAAAAGCCTGCCTGTGTTGGTGCCCAAAGCTTCACCAGCTAGGAACCTCAGGTGGCCTTTCCCGCCATGTGGGGACTGACCAGAGTGTACAGAGTTGGGCTTTCCCTCGACCTGAAGCACACTTAGTGCTTTGCACCTGTTGTCAAGCGGCTGTCACAGCCCAAGCTGTATGAAATTACAGCCTGCTGAAATTAGTCCTAAGAATTCCCAAATTTACACTGAAACGTCCCATAGTTCCTGATTCTGGCTGCCCTCTTTAGAAAAGTGGTGCTTGGGGCTCACGCCTGTAATCCTAGAGGCCGAGGCCAGCAGATCACGAGTTCAAGAGATTGAGACCATCCTGGCCAACGTGGTGCAACCCCGTCTCTATTAAAAATACAAAAAAATTAGCCAGATGTGGTGGCACGTGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCCGAGATGGCGCCACCGCACTCCAGCCCACGACAGAGCGAGACTCCGTCTCAAAAAAGAAAAAACAACAACAAAAAGAAAAGTGGTGCTTGGTGTACCGGCACATCTCCCATATGCTGATTTGGGTCCTGGGGACGCCTCCCGTTTTCCCTGACGCTTGGAAGGTTAGAGGTGCAGCCTGCTGGGGAGACACTCGCTTTCTGACCTGCAGGACCACTGGGCCTGGGGGCTGGGGCTAGGGGGTCCTGGCCTGCTCACGTGTTGGATCTGCTGCGCCCGTGGGACGTGGCCCCTTTTTGTGCAGCTCATTAGAGCTCTCAGGTAAAAGCATTCCTCGATTCAGGCTGATCCTCAGGAGGGCTGACAGTCGCTTCTCTTTTCCTTTGTATTTTGAAG
Seq C2 exon
GAAGCGCAACAGGAAAGGAGAGAAGAATGGCAAGGGCCTACGGCATTTCTCCATGAAGGTCTGCGAGAAGGTGCAGAGGAAAGGGACCACTTCCTACAACGAAGTGGCAGACGAGCTGGTTGCGGAGTTCAGTGCTGCCGACAACCACATCTTACCAAACGAGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198176:ENST00000375370:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.907 A=NA C2=0.392
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0231915=E2F_TDP=PU(56.6=83.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGGTACGCCTCAGAGACC
R:
TGACTCGTTTGGTAAGATGTGGT
Band lengths:
286-1661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains