HsaINT0166124 @ hg19
Intron Retention
Gene
ENSG00000198176 | TFDP1
Description
transcription factor Dp-1 [Source:HGNC Symbol;Acc:11749]
Coordinates
chr13:114239003-114240164:+
Coord C1 exon
chr13:114239003-114239045
Coord A exon
chr13:114239046-114240088
Coord C2 exon
chr13:114240089-114240164
Length
1043 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
3' ss Seq
TTTTTTTTTTTTTTTACCAGAAA
3' ss Score
9.95
Exon sequences
Seq C1 exon
ACCGCGCCGCGCGCACGTCACGCCGGCCCGACGCTCGGCCAGG
Seq A exon
GTGAGCCCCGCGTCCCGGCGCCACTCGGCCCAGGGCAGGGACCCCGCCACGGCCGGGACCGCCCGGCCCGGCCCCAGCCCGCGCCTCTCCGCGCCGCCCCGCGCTCCGCACCGCGCCCTCTCCGCGTCCCCGCCCGCGCGGCCGGACCGGGCAGCCAGGTGCGGGTGGGCAGGGGATGCCGCGGGAGCCGCGGGCGGGAGCCGGGGGTGCGGGCGGGACCCCCGGCCACCCCATCCCTTGCCCCGGCCGCGTGTAGGCGCCGCGCGGCCCCGACCCGCGCCCTCCCGCGCCCTGCGCGCTCCTGTGCCTCGGGGACCCCGCGCGCTCGGCGCTGGTAGGGGCTCCCCAGGTGACCGCGGGGCGGGGGTCCCGGGCCCGGCCCTCCCGGCCGACAGCAGCGTCCGCGCCCCACGCTGGAGGTGGGGCCGGGGCCGGGGCCGGGGCTGGGGCCAGGGTCGGCCGGAGCGCGCAGGGCGGGGGAGGGGAGGCCGCCCCACGGCGGCCCGCGGGGACCCGGTTCCGGCGCGCGCGGGAGGCGCCTCGTGCGGAGGCGGCCCGAGGCCTAGTGACAGGCGCGCGGCGCGGACCCCGGAAGCCCACCTGTCAGAGTTACCGGTCAGCCGGGCGGGCGCCGCCGGGGTCTGGGGTGGACGCCGCGAGCCTGCACGTTGCGCCGGGACCCCGGGGCTGTGCCCAGGTGGGTGGTGGGGCACCCCCCTGCAGCGGCGGGAGGGAGGCGCTGCGCCCTGGCTCCTGGGGCTCGGCCCCACCCTCGGCCGCTGGGCGGGCCGTCGGGGACCTGGGGGTAGTGGTGGTGACCCTGCGGGCCCGCGGGCCACTTTTCCGCAGGGGGCATTTCCGTCTGGCGAGGCGACTGAAAATCCTGAGTGTGGGAGTCGGTTTGGCCAGCTCCGCTCTCAGGATGGAGGGTGCCTTTGGGAAGGAAGGTCCGCGTTTCCTTTGAGATGTGTTATTTTTTAAACTTCGTTTTTCATTCTTACTTATTTCTTGTTTTTCCTTACTTTTTTTTTTTTTTTTACCAG
Seq C2 exon
AAAAATCATTTTTCTTCTCTGGGAAGGTGAACATTTGTAGCATTGATTTCCCGGATCTGGTAACATGGCAAAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198176-TFDP1:NR_026580:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.250
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)