HsaINT0166124 @ hg38
Intron Retention
Gene
ENSG00000198176 | TFDP1
Description
transcription factor Dp-1 [Source:HGNC Symbol;Acc:HGNC:11749]
Coordinates
chr13:113584741-113585849:+
Coord C1 exon
chr13:113584741-113584888
Coord A exon
chr13:113584889-113585773
Coord C2 exon
chr13:113585774-113585849
Length
885 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
TTTTTTTTTTTTTTTACCAGAAA
3' ss Score
9.95
Exon sequences
Seq C1 exon
CGTCCCGGCGCCACTCGGCCCAGGGCAGGGACCCCGCCACGGCCGGGACCGCCCGGCCCGGCCCCAGCCCGCGCCTCTCCGCGCCGCCCCGCGCTCCGCACCGCGCCCTCTCCGCGTCCCCGCCCGCGCGGCCGGACCGGGCAGCCAG
Seq A exon
GTGCGGGTGGGCAGGGGATGCCGCGGGAGCCGCGGGCGGGAGCCGGGGGTGCGGGCGGGACCCCCGGCCACCCCATCCCTTGCCCCGGCCGCGTGTAGGCGCCGCGCGGCCCCGACCCGCGCCCTCCCGCGCCCTGCGCGCTCCTGTGCCTCGGGGACCCCGCGCGCTCGGCGCTGGTAGGGGCTCCCCAGGTGACCGCGGGGCGGGGGTCCCGGGCCCGGCCCTCCCGGCCGACAGCAGCGTCCGCGCCCCACGCTGGAGGTGGGGCCGGGGCCGGGGCCGGGGCTGGGGCCAGGGTCGGCCGGAGCGCGCAGGGCGGGGGAGGGGAGGCCGCCCCACGGCGGCCCGCGGGGACCCGGTTCCGGCGCGCGCGGGAGGCGCCTCGTGCGGAGGCGGCCCGAGGCCTAGTGACAGGCGCGCGGCGCGGACCCCGGAAGCCCACCTGTCAGAGTTACCGGTCAGCCGGGCGGGCGCCGCCGGGGTCTGGGGTGGACGCCGCGAGCCTGCACGTTGCGCCGGGACCCCGGGGCTGTGCCCAGGTGGGTGGTGGGGCACCCCCCTGCAGCGGCGGGAGGGAGGCGCTGCGCCCTGGCTCCTGGGGCTCGGCCCCACCCTCGGCCGCTGGGCGGGCCGTCGGGGACCTGGGGGTAGTGGTGGTGACCCTGCGGGCCCGCGGGCCACTTTTCCGCAGGGGGCATTTCCGTCTGGCGAGGCGACTGAAAATCCTGAGTGTGGGAGTCGGTTTGGCCAGCTCCGCTCTCAGGATGGAGGGTGCCTTTGGGAAGGAAGGTCCGCGTTTCCTTTGAGATGTGTTATTTTTTAAACTTCGTTTTTCATTCTTACTTATTTCTTGTTTTTCCTTACTTTTTTTTTTTTTTTTACCAG
Seq C2 exon
AAAAATCATTTTTCTTCTCTGGGAAGGTGAACATTTGTAGCATTGATTTCCCGGATCTGGTAACATGGCAAAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198176:ENST00000375370:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.219
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains