HsaINT0166927 @ hg19
Intron Retention
Gene
ENSG00000217576 | THSD1P1
Description
thrombospondin, type I, domain containing 1 pseudogene 1 [Source:HGNC Symbol;Acc:31375]
Coordinates
chr13:52744122-52745383:-
Coord C1 exon
chr13:52745293-52745383
Coord A exon
chr13:52744235-52745292
Coord C2 exon
chr13:52744122-52744234
Length
1058 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATT
5' ss Score
6.49
3' ss Seq
ATTCTTTGTGTATTTGCTAGGAT
3' ss Score
6.78
Exon sequences
Seq C1 exon
GAGCTGACTAAGGCTTTGGAACAGAAACCAGATGATGCACAATATTATTGTCAAAGAGCTTATTGTCACATTCTTCTTGGGAGTTACTATG
Seq A exon
GTAATTTTTCTTCCAAAGTATATTGTCCCTTTTTAATAAGTTACTTATACATTTTACCCATGACAAATTAGTCAAATAAAATAAAGGTTGTCTTTGAGGATTTTTAAATTGGTCTTTCATACAAGGTACAGTATCTCAAGTGTGACAGACATGTTGAGCAACACCTATTAAATTTTATGGATGTCTCATTTTCCTTCAGTGGGTGGAGAATGTATATAGATTTCATTCATAGTTATTGGGTAGGCTGATAAAGAATAGTATCATATTTACTATTTGACAGAGTATTAAAATGAAATGCTCTTCTTTGTATTTTTTATAAAAACGAATGTGGCCAGGCATGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGAGACCAAAGCTGGAGGATCACATGAGCCCAAGAGTTCGAGTCCAGCCTGGACAACATAGCAAGACCCTATCTATATTAAAAAGTAATGTATTTCTGTATTGTGTAACTTTAAAAAGTTATTCTGATGAAGAATCTGGATAGGGAAAAACTGAATATCTTTTTTTTTTAGACGGAGTTTCGCTCTTGTTGCCTAGGCTGGAGTGCAGTGGCTTGATCTCAGCTCACTGCAGCCTTCGCCTCCCAGGTTCAAGGGATTCTCCTGCCTCAGCCTCCCAGGTAGCTGGGACCACAGGCACGTGCCACCATGCCTGGCTAATTTTGTATTTTTAGCAGAGACGGAGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCACAGGTGATCCACCCTCCTCGGCCTCCCAAAATGCTGGGATTACAGGTGTGAGCCACTGCACCCGGCCAAATTATATAGATTATGCTAATGAGAAAAGGAGATGAATTTTGTGACACAGCTTTATTCATTGACTGAAGAGCTTTAAGAATGAAGCTAAATGTTAAGCCAAAAGGAAGGTACAAGAGTATTATTTATTTGAATTCTGTCTTGGATTAGCTTTTCCTAATTTAAAACCGTTTGGTGTTTCTATCAACTCGAAAACTTAGAAATCTAAAACTGATTCATATTCTTTGTGTATTTGCTAG
Seq C2 exon
GATCTGTAAATAACTGACGAAAAACCCATCTGTTTCTACGTAGTTGCTGTTGCCGACACAAAGAAGTCTTATGAACTCAATCCAAATAATTCCACTGCTATGCTGAGAAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000217576-THSD1P1:NR_002816:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGACTAAGGCTTTGGAACA
R:
CCTTTTCTCAGCATAGCAGTGGA
Band lengths:
203-1261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)